Name: Thermoflavifilum aggregans P373
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24743

Type strain:

Species: Thermoflavifilum aggregans

Strain Designation: P373

Culture col. no.: DSM 27268, ICMP 20041

Strain history: <- M. Stott, Wairakei Res. Centre, Taupo, New Zealand; P373 <- P. Dunfield

NCBI tax ID(s): 454188 (species)

SI-ID 408029

DSM 27268

Special Collections

DSMZ

Section

Thermoflavifilum aggregans P373 is a bacterium that was isolated from geothermally heated soil from a clay wall adjacent to a 98 °C hot spring.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Thermoflavifilum*
	Species	**Thermoflavifilum aggregans**
	Full Scientific Name (LPSN)	Thermoflavifilum aggregans Anders et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.378

[Ref.: #69480]	Motility	no Confidence in %91

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21323]

Culture medium

HALF STRENGTH R2A (DSMZ Medium 1492)

[Ref.: #21323]

Culture medium growth

[Ref.: #21323]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21323]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21323]			growth	60 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.533
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21323]	Sample type/isolated from	geothermally heated soil from a clay wall adjacent to a 98 °C hot spring
[Ref.: #21323]	Geographic location (country and/or sea, region)	Waikite Valley Thermal Pools
[Ref.: #21323]	Country	New Zealand
[Ref.: #21323]	Country ISO 3 Code	NZL
[Ref.: #21323]	Continent	Australia and Oceania
[Ref.: #21323]	Geographic location	-38.3271°/176.3030°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM749771 (>99% sequence identity) for Thermoflavifilum from Microbeatlas

Aquatic Samples	276
Soil Samples	175
Animal Samples	57
Plant Samples	44
Total Samples	552

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21323]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21323]	Thermoflavifilum aggregans partial 16S rRNA gene, type strain P373T	AM749771	1396	GenBank ENA	454188 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermoflavifilum aggregans DSM 27268	GCA_002797735	contig	GenBank ENA	454188 tax ID	*
[Ref.: #66792]	Thermoflavifilum aggregans strain DSM 27268	454188.3	wgs	PATRIC	454188 tax ID	*
[Ref.: #66792]	Thermoflavifilum aggregans DSM 27268	2728369217	draft	JGI IMG/M	454188 tax ID	*

[Ref.: #21323]

GC-content

47.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermoflavifilum aggregans strain DSM 27268 PATRIC: 454188.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermoflavifilum aggregans strain DSM 27268 PATRIC: 454188.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.378	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.318	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.533	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	79.728	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	54.792	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	no

Availability in culture collections External links

[Ref.: #21323]

Culture collection no.

DSM 27268, ICMP 20041

[Ref.: #88571]

SI-ID 408029

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermoflavifilum aggregans gen. nov., sp. nov., a thermophilic and slightly halophilic filamentous bacterium from the phylum Bacteroidetes.	Anders H, Dunfield PF, Lagutin K, Houghton KM, Power JF, MacKenzie AD, Vyssotski M, Ryan JLJ, Hanssen EG, Moreau JW, Stott MB	Int J Syst Evol Microbiol	10.1099/ijs.0.057463-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21323

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27268

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88571

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408029.1 )

* These data were automatically processed and therefore are not curated

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Thermoflavifilum aggregans strain DSM 27268

Thermoflavifilum aggregans strain DSM 27268

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