Name: Sediminibacterium magnilacihabitans MU-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24742

Type strain:

Species: Sediminibacterium magnilacihabitans

Strain Designation: MU-2

Culture col. no.: DSM 22423, KCTC 42570, NRRL B-59231, KCTC 22720

Strain history: <- DSM <- RA Albert, Marquette Univ., WI, USA, MU-2

NCBI tax ID(s): 669455 (species)

SI-ID 404922

DSM 22423

Special Collections

DSMZ
KCTC

Other strains from Sediminibacterium magnilacihabitans

Section

Sediminibacterium magnilacihabitans MU-2 is an aerobe, rod-shaped bacterium that was isolated from lake water from a community water system.

rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Sediminibacterium*
	Species	**Sediminibacterium magnilacihabitans**
	Full Scientific Name (LPSN)	Sediminibacterium magnilacihabitans (Albert et al. 2014) García-López et al. 2020

Synonym

Vibrionimonas magnilacihabitans

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %92.744

[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	curved-shaped

[Ref.: #69480]	Motility	no Confidence in %91.25

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21306]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #21306]

Culture medium growth

[Ref.: #21306]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21306]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21306]			growth	28 °C
[Ref.: #67771]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67771]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21306]	Sample type/isolated from	lake water from a community water system
[Ref.: #21306]	Geographic location (country and/or sea, region)	Wisconsin, Lake Michigan, Port Washington
[Ref.: #21306]	Country	USA
[Ref.: #21306]	Country ISO 3 Code	USA
[Ref.: #21306]	Continent	North America

[Ref.: #67771]	Sample type/isolated from	From Lake Michigan water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Lake Michigan, Port Washington, south-eastern Wisconsin
[Ref.: #67771]	Country	USA
[Ref.: #67771]	Country ISO 3 Code	USA
[Ref.: #67771]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Lake (large)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ816610 (>99% sequence identity) for Sediminibacterium magnilacihabitans from Microbeatlas

Aquatic Samples	2659
Soil Samples	2579
Animal Samples	7557
Plant Samples	1288
Total Samples	14083

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21306]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21306]	Sediminibacterium magnilacihabitans strain MU-2 from USA 16S ribosomal RNA gene, partial sequence	FJ816610	1409	GenBank ENA	669455 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sediminibacterium magnilacihabitans DSM 22423	GCA_002973575	contig	GenBank ENA	669455 tax ID	*
[Ref.: #66792]	Vibrionimonas magnilacihabitans strain DSM 22423	669455.3	wgs	PATRIC	669455 tax ID	*
[Ref.: #66792]	Vibrionimonas magnilacihabitans DSM 22423	2728369469	draft	JGI IMG/M	669455 tax ID	*

[Ref.: #21306]	GC-content	45.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	45.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrionimonas magnilacihabitans strain DSM 22423 PATRIC: 669455.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	92.744	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	99.245	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.622	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.13	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.055	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91.25	no

Availability in culture collections External links

[Ref.: #21306]

Culture collection no.

DSM 22423, KCTC 42570, NRRL B-59231, KCTC 22720

[Ref.: #88570]

SI-ID 404922

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Filimonas aurantiibacter sp. nov., an orange-pigmented bacterium isolated from lake water and emended description of the genus Filimonas.	Albert RA, Waas NE, Pavlons SC, Pearson JL, Roecker J, Tewalt N, Cleeve N, Rossello-Mora R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001305	2016	*
Phylogeny	Proposal of Vibrionimonas magnilacihabitans gen. nov., sp. nov., a curved Gram-stain-negative bacterium isolated from lake water.	Albert RA, Zitomer D, Dollhopf M, Schauer-Gimenez AE, Struble C, King M, Son S, Langer S, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.056663-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21306

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22423

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88570

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404922.1 )

* These data were automatically processed and therefore are not curated

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Vibrionimonas magnilacihabitans strain DSM 22423

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