Name: Thiorhodococcus mannitoliphagus WS
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2472

Type strain:

Species: Thiorhodococcus mannitoliphagus

Strain Designation: WS

Culture col. no.: DSM 18266, ATCC BAA-1228, VKM B-2393

Strain history: <- J. F. Imhoff, IFM-GEOMAR, Kiel, Germany; WS <- V. Gorlenko, Winogradski Inst. Microbiol., RAS, Moscow, Russia

NCBI tax ID(s): 329406 (species)

SI-ID 297346

ATCC BAA-1228, VKM B-2393, DSM 18266

Section

Thiorhodococcus mannitoliphagus WS is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from microbial mat communities of an estuary of the Nilma river.

coccus-shaped
Gram-negative
motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Thiorhodococcus*
	Species	**Thiorhodococcus mannitoliphagus**
	Full Scientific Name (LPSN)	Thiorhodococcus mannitoliphagus Rabold et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31657]	Gram stain	negative

[Ref.: #31657]	Cell width	1.85 µm

[Ref.: #31657]	Cell shape	coccus-shaped

[Ref.: #31657]	Motility	yes

[Ref.: #31657]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7465]

Culture medium

THIORHODOCOCCUS MEDIUM II (DSMZ Medium 28b)

[Ref.: #7465]

Culture medium growth

[Ref.: #7465]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7465]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7465]	growth	25-30 °C
[Ref.: #31657]	growth	25-30 °C
[Ref.: #31657]	optimum	25-30 °C

[Ref.: #7465]	Temperature range	mesophilic
[Ref.: #31657]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31657]			optimum	7-7.5
[Ref.: #31657]			growth	7-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31657]

Oxygen tolerance

anaerobe

[Ref.: #31657]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31657]		NaCl		growth	0.5-2	%
[Ref.: #31657]		NaCl		optimum	0.5-2	%

[Ref.: #31657]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31657]	acetate ChEBI	+	carbon source
[Ref.: #31657]	fructose ChEBI	+	carbon source
[Ref.: #31657]	glucose ChEBI	+	carbon source
[Ref.: #31657]	lactate ChEBI	+	carbon source
[Ref.: #31657]	malate ChEBI	+	carbon source
[Ref.: #31657]	mannitol ChEBI	+	carbon source
[Ref.: #31657]	propionate ChEBI	+	carbon source
[Ref.: #31657]	pyruvate ChEBI	+	carbon source
[Ref.: #31657]	succinate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7465]	Sample type/isolated from	microbial mat communities of an estuary of the Nilma river
[Ref.: #7465]	Geographic location (country and/or sea, region)	White Sea coast
[Ref.: #7465]	Country	Russia
[Ref.: #7465]	Country ISO 3 Code	RUS
[Ref.: #7465]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Microbial community	#Microbial mat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ971090 (>99% sequence identity) for Thiorhodococcus mannitoliphagus subclade from Microbeatlas

Aquatic Samples	30
Soil Samples	4
Animal Samples	2
Plant Samples
Total Samples	36

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7465]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7465]	Thiorhodococcus mannitoliphagus partial 16S rRNA gene, type strain WST	AJ971090	1404	ENA	329406 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thiorhodococcus mannitoliphagus DSM 18266	GCA_010915725	contig	GenBank	329406 tax ID	*
[Ref.: #66792]	Thiorhodococcus mannitoliphagus strain DSM 18266	329406.4	wgs	PATRIC	329406 tax ID	*

[Ref.: #7465]

GC-content

61.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thiorhodococcus mannitoliphagus strain DSM 18266 PATRIC: 329406.4
[Ref.: #69480]	gram-positive	no	98.645	yes
[Ref.: #69480]	anaerobic	yes	96.495	yes
[Ref.: #69480]	halophile	no	87.185	no
[Ref.: #69480]	spore-forming	no	90.758	no
[Ref.: #69480]	glucose-util	yes	81.86	yes
[Ref.: #69480]	motile	yes	90.114	yes
[Ref.: #69480]	flagellated	yes	53.508	no
[Ref.: #69480]	aerobic	no	95.966	yes
[Ref.: #69480]	thermophile	no	97.718	yes
[Ref.: #69480]	glucose-ferment	no	79.908	no

Availability in culture collections External links

[Ref.: #7465]

Culture collection no.

DSM 18266, ATCC BAA-1228, VKM B-2393

[Ref.: #72014]

SI-ID 297346

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thiorhodococcus mannitoliphagus sp. nov., a purple sulfur bacterium from the White Sea.	Rabold S, Gorlenko VM, Imhoff JF	Int J Syst Evol Microbiol	10.1099/ijs.0.63981-0	2006	*

References

#7465

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18266

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31657

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27938 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72014

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297346.1 )

#27938

IJSEM 1945 2006 ( DOI 10.1099/ijs.0.63981-0 , PubMed 16902035 )

* These data were automatically processed and therefore are not curated

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Thiorhodococcus mannitoliphagus strain DSM 18266

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