Name: Vulcaniibacterium thermophilum DSM 25896
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24685

Type strain:

Species: Vulcaniibacterium thermophilum

Culture col. no.: DSM 25896, CCTCC AB 2012064, KCTC 32020, YIM 77875

Strain history: <- S-K Tang, Yunnan Inst., China

NCBI tax ID(s): 1169913 (species)

SI-ID 401096

DSM 25896

Section

Vulcaniibacterium thermophilum DSM 25896 is an aerobe, thermophilic, Gram-negative bacterium that was isolated from geothermal soil.

Gram-negative
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Vulcaniibacterium*
	Species	**Vulcaniibacterium thermophilum**
	Full Scientific Name (LPSN)	Vulcaniibacterium thermophilum (Wei et al. 2013) Yu et al. 2014

Synonym

Lysobacter thermophilus

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.984

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20640]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20640]

Culture medium growth

[Ref.: #20640]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20640]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20640]			growth	50 °C
[Ref.: #67771]			growth	50 °C

[Ref.: #20640]	Temperature range	thermophilic
[Ref.: #67771]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %95
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.98

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20640]	Sample type/isolated from	geothermal soil
[Ref.: #20640]	Geographic location (country and/or sea, region)	Yunnan Province, Tengchong, Rehai National Park (N 24.95002° W 98.43742°)
[Ref.: #20640]	Country	China
[Ref.: #20640]	Country ISO 3 Code	CHN
[Ref.: #20640]	Continent	Asia
[Ref.: #20640]	Geographic location	24.9500°/98.4374°

[Ref.: #67771]	Sample type/isolated from	From geothermal soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Tengchong
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ746036 (>99% sequence identity) for Vulcaniibacterium thermophilum subclade from Microbeatlas

Aquatic Samples	4704
Soil Samples	5534
Animal Samples	11080
Plant Samples	1278
Total Samples	22596

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20640]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20640]	Lysobacter thermophilus strain YIM 77875 16S ribosomal RNA gene, partial sequence	JQ746036	1542	ENA	1169913 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vulcaniibacterium thermophilum KCTC 32020	GCA_007923255	scaffold	GenBank	1169913 tax ID	*
[Ref.: #66792]	Vulcaniibacterium thermophilum KCTC 32020	GCA_014656335	scaffold	GenBank	1169913 tax ID	*
[Ref.: #66792]	Vulcaniibacterium thermophilum strain KCTC 32020	1169913.4	wgs	PATRIC	1169913 tax ID	*
[Ref.: #66792]	Vulcaniibacterium thermophilum strain KCTC 32020	1169913.3	wgs	PATRIC	1169913 tax ID	*

[Ref.: #20640]

GC-content

68.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vulcaniibacterium thermophilum KCTC 32020 NCBI: GCA_007923255.1
[Ref.: #69481]	spore-forming	no	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vulcaniibacterium thermophilum KCTC 32020 NCBI: GCA_007923255.1
[Ref.: #69480]	motile	yes	66.704	no
[Ref.: #69480]	flagellated	no	88.327	no
[Ref.: #69480]	gram-positive	no	98.473	yes
[Ref.: #69480]	anaerobic	no	98.752	yes
[Ref.: #69480]	aerobic	yes	88.22	yes
[Ref.: #69480]	halophile	no	95.619	no
[Ref.: #69480]	spore-forming	no	94.969	no
[Ref.: #69480]	glucose-util	yes	82.672	no
[Ref.: #69480]	thermophile	yes	53.797	yes
[Ref.: #69480]	glucose-ferment	no	89.062	no

Availability in culture collections External links

[Ref.: #20640]

Culture collection no.

DSM 25896, CCTCC AB 2012064, KCTC 32020, YIM 77875

[Ref.: #88521]

SI-ID 401096

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vulcaniibacterium gelatinicum sp. nov., a moderately thermophilic bacterium isolated from a hot spring.	Niu XK, Narsing Rao MP, Dong ZY, Kan Y, Li QR, Huang J, Zhao L, Wang MZ, Shen ZP, Kang YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003934	2020	*
Phylogeny	Vulcaniibacterium tengchongense gen. nov., sp. nov. isolated from a geothermally heated soil sample, and reclassification of Lysobacter thermophilus Wei et al. 2012 as Vulcaniibacterium thermophilum comb. nov.	Yu TT, Zhou EM, Yin YR, Yao JC, Ming H, Dong L, Li S, Nie GX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-013-9959-4	2013	*
Phylogeny	Lysobacter thermophilus sp. nov., isolated from a geothermal soil sample in Tengchong, south-west China.	Wei DQ, Yu TT, Yao JC, Zhou EM, Song ZQ, Yin YR, Ming H, Tang SK, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-012-9761-8	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20640

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25896

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88521

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401096.1 )

* These data were automatically processed and therefore are not curated

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Vulcaniibacterium thermophilum KCTC 32020

Vulcaniibacterium thermophilum KCTC 32020

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