Name: Rehaibacterium terrae DSM 25897
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24684

Type strain:

Species: Rehaibacterium terrae

Culture col. no.: DSM 25897, CCTCC AB 2012062, YIM 77974

Strain history: <- S.-K. Tang, Yunnan University, Kunming, China <- T.-T. Yu, Yunnan Univ., Yunnan Inst. Microbiol., Kunming, China

NCBI tax ID(s): 1341696 (species)

SI-ID 408004

DSM 25897

Section

Rehaibacterium terrae DSM 25897 is an aerobe, thermophilic, Gram-negative bacterium that was isolated from geothermally heated soil.

Gram-negative
rod-shaped
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Rehaibacterium*
	Species	**Rehaibacterium terrae**
	Full Scientific Name (LPSN)	Rehaibacterium terrae Yu et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31022]	Gram stain	negative

[Ref.: #31022]	Cell length	0.25 µm

[Ref.: #31022]	Cell width	0.15 µm

[Ref.: #31022]	Cell shape	rod-shaped

[Ref.: #31022]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21293]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #21293]

Culture medium growth

[Ref.: #21293]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21293]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21293]	growth	45 °C
[Ref.: #31022]	growth	30-55 °C
[Ref.: #31022]	optimum	45 °C

[Ref.: #21293]	Temperature range	thermophilic
[Ref.: #31022]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31022]			optimum	8
[Ref.: #31022]			growth	7.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31022]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31022]		NaCl		growth	0-3	%
[Ref.: #31022]		NaCl		optimum	0.5	%

[Ref.: #31022]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31022]	fructose ChEBI	+	carbon source
[Ref.: #31022]	lactose ChEBI	+	carbon source
[Ref.: #31022]	maltose ChEBI	+	carbon source
[Ref.: #31022]	nitrate ChEBI	+	reduction
[Ref.: #31022]	ribose ChEBI	+	carbon source
[Ref.: #31022]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31022]	acid phosphatase	+	3.1.3.2
[Ref.: #31022]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31022]	catalase	+	1.11.1.6
[Ref.: #31022]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31022]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21293]	Sample type/isolated from	geothermally heated soil
[Ref.: #21293]	Geographic location (country and/or sea, region)	Yunnan province, Tengchong, Rehai National Park (24.95002° N 98.43742° W)
[Ref.: #21293]	Country	China
[Ref.: #21293]	Country ISO 3 Code	CHN
[Ref.: #21293]	Continent	Asia
[Ref.: #21293]	Geographic location	24.9500°/98.4374°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC999854 (>99% sequence identity) for Rehaibacterium terrae subclade from Microbeatlas

Aquatic Samples	422
Soil Samples	211
Animal Samples	323
Plant Samples	33
Total Samples	989

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21293]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21293]	Rehaibacterium terrae strain YIM 77974 16S ribosomal RNA gene, partial sequence	KC999854	1548	ENA	1341696 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rehaibacterium terrae DSM 25897	GCA_014202935	scaffold	GenBank	1341696 tax ID	*
[Ref.: #66792]	Rehaibacterium terrae strain DSM 25897	1341696.3	wgs	PATRIC	1341696 tax ID	*
[Ref.: #66792]	Rehaibacterium terrae DSM 25897	2861651007	draft	JGI IMG/M	1341696 tax ID	*

[Ref.: #21293]	GC-content	68.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31022]	GC-content	68.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rehaibacterium terrae DSM 25897 NCBI: GCA_014202935.1
[Ref.: #69480]	flagellated	no	59.723	no
[Ref.: #69480]	gram-positive	no	99.043	yes
[Ref.: #69480]	anaerobic	no	97.965	yes
[Ref.: #69480]	aerobic	yes	90.319	yes
[Ref.: #69480]	halophile	no	91.436	yes
[Ref.: #69480]	spore-forming	no	96.601	no
[Ref.: #69480]	glucose-util	yes	81.293	no
[Ref.: #69480]	thermophile	no	62.624	yes
[Ref.: #69480]	motile	yes	81.72	no
[Ref.: #69480]	glucose-ferment	no	86.2	no

Availability in culture collections External links

[Ref.: #21293]

Culture collection no.

DSM 25897, CCTCC AB 2012062, YIM 77974

[Ref.: #88520]

SI-ID 408004

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rehaibacterium terrae gen. nov., sp. nov. isolated from a geothermally heated soil sample.	Yu TT, Yao JC, Yin YR, Dong L, Liu RF, Ming H, Zhou EM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.049973-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21293

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25897

#31022

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27352 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88520

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408004.1 )

#27352

IJSEM 4058 2013 ( DOI 10.1099/ijs.0.049973-0 , PubMed 23771618 )

* These data were automatically processed and therefore are not curated

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