Thiohalocapsa marina (DSM 19078, JCM 14780, JA142)

Name: Thiohalocapsa marina (DSM 19078, JCM 14780, JA142)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2468

Type strain

Strain Designation JA142

Culture col. no. DSM 19078 JCM 14780 JA142

NCBI tax ID(s) 424902

Special Collections DSMZ JCM Literature strains

Links

Thiohalocapsa marina JA142 is an anaerobe, mesophilic, Gram-negative prokaryote that was isolated from marine aquaculture pond.

Gram-negative coccus-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 391009

JCM 14780

@ref 20215

Last LPSN update 2025-12-16 09:47:19

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Chromatiales

Family Chromatiaceae

Genus Thiohalocapsa

Species Thiohalocapsa marina

Full scientific name Thiohalocapsa marina Anil Kumar et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
28978	negative	1.5-2.0 µm	1.5-2.0 µm	coccus-shaped
125438	negative					99

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
28978	positive	growth	25-30	mesophilic
28978	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
28978	positive	optimum	7.5
28978	positive	growth	6.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
7870	anaerobe
28978	anaerobe
125439	obligate aerobe	93.5

Spore formation

@ref	Spore formation	Confidence
125438		91.962

Halophily

@ref	Salt	Growth	Tested relation	Concentration
28978	NaCl	positive	growth	1.0-6.0 %
28978	NaCl	positive	optimum	2 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
28978	30089 ChEBI	acetate	+	carbon source
28978	17234 ChEBI	glucose	+	carbon source
28978	24996 ChEBI	lactate	+	carbon source
28978	15361 ChEBI	pyruvate	+	carbon source
28978	30031 ChEBI	succinate	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Pond (small)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7870	marine aquaculture pond	Visakhapatnam, near Bheemli	India	IND	Asia
67770	Marine aquaculture pond near Bheemli	Visakhapatnam	India	IND	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7870	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM863233v1 assembly for Thiohalocapsa marina DSM 19078	contig	GCA_008632335	424902.4	2988976332	424902	59.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7870	Thiohalocapsa marina partial 16S rRNA gene, strain JA142T	AM491592	1399		424902
124043	Thiohalocapsa marina JCM 14780 gene for 16S rRNA, partial sequence.	LC638728	1470		424902

GC content

@ref	GC-content (mol%)	Method
7870	64.8	high performance liquid chromatography (HPLC)
28978	64.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thiohalocapsa marina DSM 19078
NCBI: GCA_008632335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	82.40	no
125439	motility	BacteriaNetⓘ	yes	63.50	no
125439	gram_stain	BacteriaNetⓘ	negative	77.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thiohalocapsa marina strain DSM 19078
PATRIC: 424902.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	yes	70.32	yes
125438	spore-forming	spore-formingⓘ	no	91.96	no
125438	aerobic	aerobicⓘ	no	78.25	yes
125438	thermophilic	thermophileⓘ	no	91.80	no
125438	flagellated	motile2+ⓘ	no	59.35	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic sequence data of Thiohalocapsa marina: a sulfur-oxidizing bacterium prevalent in treated municipal wastewater and commercial shrimp hatchery effluents.	Reyes G, Betancourt I, Andrade B, Pozo Y, Sorroza L, Trujillo LE, Bayot B.	BMC Res Notes	10.1186/s13104-025-07162-x	2025
Genetics	Single-cell genomics-based analysis reveals a vital ecological role of Thiocapsa sp. LSW in the meromictic Lake Shunet, Siberia.	Wu YT, Chiang PW, Tandon K, Rogozin DY, Degermendzhy AG, Tang SL.	Microb Genom	10.1099/mgen.0.000712	2021
Phylogeny	Thiohalocapsa marina sp. nov., from an Indian marine aquaculture pond.	Anil Kumar P, Srinivas TN, Thiel V, Tank M, Sasikala Ch, Ramana ChV, Imhoff JF	Int J Syst Evol Microbiol	10.1099/ijs.0.003053-0	2009

References

#7870	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19078
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28978	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25412 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Thiohalocapsa marina (DSM 19078, JCM 14780, JA142)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_008632335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media