Vibrio toranzoniae (DSM 28519, CAIM 1869, CECT 7225)

Name: Vibrio toranzoniae (DSM 28519, CAIM 1869, CECT 7225)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24660

Type strain

Strain Designation Vb 10.8

Culture col. no. DSM 28519 CAIM 1869 CECT 7225 Vb 10.8

NCBI tax ID(s) 1194427

Special Collections DSMZ

History <- CECT <- J. L. Romalde, University of Santiago de Compostela, Spain <- S. Balboa

Links

Vibrio toranzoniae Vb 10.8 is a mesophilic prokaryote that was isolated from cultured Manila clam Ruditapes philippinarum.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 376927

DSM 28519,CAIM 1869,CECT 7225

@ref 20215

Last LPSN update 2025-12-16 09:52:54

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio toranzoniae

Full scientific name Vibrio toranzoniae Lasa et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.7
125438		91.974
125438	negative	100

Multimedia

@ref:	21066
multimedia content:	DSM_28519.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_28519.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21066	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21066	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.6

Spore formation

@ref	Spore formation	Confidence
125439		99.6
125438		92.693

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
21066	-	-	-	-	-	-	-	-	+	+	+	+	+	-	-	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Aquaculture
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
21066	cultured Manila clam Ruditapes philippinarum	Ruditapes philippinarum	Ría de Vigo	Spain	ESP	Europe	42.3472	-8.6367 42.3472/-8.6367

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21066	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2434765v1 assembly for Vibrio toranzoniae CECT 7225	complete	GCA_024347655	1194427.41		1194427	99.11
66792	VtoranzoniaeCECT7225_SPAdes_Prokka assembly for Vibrio toranzoniae CECT 7225	contig	GCA_900089765	1194427.5	8033328034	1194427	68.78
66792	ASM154133v1 assembly for Vibrio toranzoniae Vb 10.8	contig	GCA_001541335	1194427.3	2988656126	1194427	46.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21066	Vibrio toranzoniae partial 16S rRNA gene, type strain Vb 10.8T	HE978310	1507		1194427
124043	Vibrio toranzoniae strain CECT 7225 16S ribosomal RNA gene, partial sequence.	EU541606	1454		1194427

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio toranzoniae CECT 7225
NCBI: GCA_900089765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	motility	BacteriaNetⓘ	yes	86.10	no
125439	spore_formation	BacteriaNetⓘ	no	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio toranzoniae CECT 7225
NCBI: GCA_024347655.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	97.71	no
125438	aerobic	aerobicⓘ	no	58.58	no
125438	spore-forming	spore-formingⓘ	no	92.69	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	91.97	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative genomics of Vibrio toranzoniae strains.	Barcia-Cruz R, Balboa S, Lema A, Romalde JL.	Int Microbiol	10.1007/s10123-024-00557-z	2025
	Comparative Genomic Analysis of Two Vibrio toranzoniae Strains with Different Virulence Capacity Reveals Clues on Its Pathogenicity for Fish.	Lasa A, Gibas CJ, Romalde JL	Front Microbiol	10.3389/fmicb.2017.00086	2017
Genetics	Draft Genome Sequence of Vibrio toranzoniae Strain CECT 7225T.	Lasa A, Gibas CJ, Romalde JL	Genome Announc	10.1128/genomeA.00212-16	2016
Phylogeny	Vibrio toranzoniae sp. nov., a new member of the Splendidus clade in the genus Vibrio.	Lasa A, Dieguez AL, Romalde JL	Syst Appl Microbiol	10.1016/j.syapm.2012.11.005	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21066	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28519
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio toranzoniae (DSM 28519, CAIM 1869, CECT 7225)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_024347655

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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