Caldanaerobius polysaccharolyticus (DSM 13641, KMTHCJ)

Name: Caldanaerobius polysaccharolyticus (DSM 13641, KMTHCJ)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24650

Type strain

Strain Designation KMTHCJ

Culture col. no. DSM 13641 KMTHCJ

NCBI tax ID(s) 935948 44256

Special Collections DSMZ

History <- P. G. Stroot; KMTHCJ <- I. O. K. Cann and P. G. Stroot

Links

Caldanaerobius polysaccharolyticus KMTHCJ is an anaerobe, thermophilic prokaryote that was isolated from organic waste leachate.

anaerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 49499

DSM 13641,ATCC BAA-17

@ref 20215

Last LPSN update 2026-02-09 11:24:02

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Thermoanaerobacterales

Family Thermoanaerobacteraceae

Genus Caldanaerobius

Species Caldanaerobius polysaccharolyticus

Full scientific name Caldanaerobius polysaccharolyticus (Cann et al. 2001) Lee et al. 2008

Synonyms (1)

Thermoanaerobacterium polysaccharolyticum

Morphology

Multimedia

@ref:	66793
multimedia content:	EM_DSM_13641_1.jpg
multimedia.multimedia content:	EM_DSM_13641_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_13641_2.jpg
multimedia.multimedia content:	EM_DSM_13641_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_13641_3.jpg
multimedia.multimedia content:	EM_DSM_13641_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_13641_4.jpg
multimedia.multimedia content:	EM_DSM_13641_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_13641_5.jpg
multimedia.multimedia content:	EM_DSM_13641_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21060	CLOSTRIDIUM LJUNGDAHLII MEDIUM (DSMZ Medium 879)		Medium recipe at MediaDive	Name: CLOSTRIDIUM LJUNGDAHLII MEDIUM (DSMZ Medium 879; with strain-specific modifications) Composition: Sucrose 4.9456 g/l NaHCO3 2.4728 g/l NH4Cl 0.98912 g/l Yeast extract 0.98912 g/l Na2S x 9 H2O 0.296736 g/l L-Cysteine HCl x H2O 0.296736 g/l KCl 0.098912 g/l KH2PO4 0.098912 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l ZnSO4 x 7 H2O 0.00178042 g/l CoSO4 x 7 H2O 0.00178042 g/l CaCl2 x 2 H2O 0.00098912 g/l FeSO4 x 7 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l CuSO4 x 5 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21060	positive	growth	65	thermophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
21060	anaerobe
125439	anaerobe	99.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Wastewater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21060	organic waste leachate	Illinois, Hoopeston	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence U40229 (>99% sequence identity) for Caldanaerobius polysaccharolyticus subclade from Microbeatlas

Aquatic Samples	5
Soil Samples	1
Animal Samples	1
Plant Samples
Total Samples	7

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21060	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42742v1 assembly for Caldanaerobius polysaccharolyticus DSM 13641	scaffold	GCA_000427425	935948.5	2510065085	935948	75.32

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21060	Thermoanaerobacterium polysaccharolyticum 16S ribosomal RNA gene, complete sequence	U40229	1438		935948

GC content

@ref	GC-content (mol%)	Method
21060	46	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Caldanaerobius polysaccharolyticus DSM 13641
NCBI: GCA_000427425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.10	no
125439	motility	BacteriaNetⓘ	yes	81.60	no
125439	gram_stain	BacteriaNetⓘ	variable	65.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Caldanaerobius polysaccharolyticus DSM 13641 DSM 13641
NCBI: GCA_000427425.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	62.16	no
125438	anaerobic	anaerobicⓘ	yes	86.88	no
125438	aerobic	aerobicⓘ	no	89.82	yes
125438	spore-forming	spore-formingⓘ	yes	74.90	no
125438	thermophilic	thermophileⓘ	yes	73.42	no
125438	flagellated	motile2+ⓘ	yes	67.35	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Cellulose synthesis by Komagataeibacter rhaeticus strain P 1463 isolated from Kombucha.	Semjonovs P, Ruklisha M, Paegle L, Saka M, Treimane R, Skute M, Rozenberga L, Vikele L, Sabovics M, Cleenwerck I.	Appl Microbiol Biotechnol	10.1007/s00253-016-7761-8	2017
Genetics	Expansion segments in bacterial and archaeal 5S ribosomal RNAs.	Stepanov VG, Fox GE.	RNA	10.1261/rna.077123.120	2021
Metabolism	Structural and biochemical basis for mannan utilization by Caldanaerobius polysaccharolyticus strain ATCC BAA-17.	Chekan JR, Kwon IH, Agarwal V, Dodd D, Revindran V, Mackie RI, Cann I, Nair SK.	J Biol Chem	10.1074/jbc.m114.579904	2014
Metabolism	Genomic Analysis of Calderihabitans maritimus KKC1, a Thermophilic, Hydrogenogenic, Carboxydotrophic Bacterium Isolated from Marine Sediment.	Omae K, Yoneda Y, Fukuyama Y, Yoshida T, Sako Y.	Appl Environ Microbiol	10.1128/aem.00832-17	2017
	Fermentation of Mannitol Extracts From Brown Macro Algae by Thermophilic Clostridia.	Chades T, Scully SM, Ingvadottir EM, Orlygsson J.	Front Microbiol	10.3389/fmicb.2018.01931	2018
	Genome-scale analysis of Acetobacterium bakii reveals the cold adaptation of psychrotolerant acetogens by post-transcriptional regulation.	Shin J, Song Y, Jin S, Lee JK, Kim DR, Kim SC, Cho S, Cho BK.	RNA	10.1261/rna.068239.118	2018
Phylogeny	Characterization of two novel saccharolytic, anaerobic thermophiles, Thermoanaerobacterium polysaccharolyticum sp. nov. and Thermoanaerobacterium zeae sp. nov., and emendation of the genus Thermoanaerobacterium.	Cann IK, Stroot PG, Mackie KR, White BA, Mackie RI	Int J Syst Evol Microbiol	10.1099/00207713-51-2-293	2001

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21060	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13641
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caldanaerobius polysaccharolyticus (DSM 13641, KMTHCJ)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000427425

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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