Name: Planobispora siamensis A-T 4600
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24635

Type strain:

Species: Planobispora siamensis

Strain Designation: A-T 4600

Culture col. no.: DSM 46704, BCC 39469, NBRC 107568

Strain history: <- C Suriyachadkun, BCC; BCC 39469 <- S. Chunhametha

NCBI tax ID(s): 936338 (species)

SI-ID 407606

DSM 46704

Section

Planobispora siamensis A-T 4600 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

coccus-shaped
Gram-positive
motile
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Planobispora*
	Species	**Planobispora siamensis**
	Full Scientific Name (LPSN)	Planobispora siamensis Ngaemthao et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30894]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30894]	Cell shape	coccus-shaped

[Ref.: #30894]	Motility	yes

[Ref.: #30894]

Pigment production

Multimedia content

[Ref.: #20735]

Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #20735]	growth	28 °C
[Ref.: #30894]	growth	25-30 °C
[Ref.: #30894]	optimum	27.5 °C

[Ref.: #20735]	Temperature range	mesophilic
[Ref.: #30894]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #30894]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30894]		NaCl		growth	0-1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30894]	arabinose ChEBI	+	carbon source
[Ref.: #30894]	cellobiose ChEBI	+	carbon source
[Ref.: #30894]	fructose ChEBI	+	carbon source
[Ref.: #30894]	galactose ChEBI	+	carbon source
[Ref.: #30894]	glucose ChEBI	+	carbon source
[Ref.: #30894]	mannitol ChEBI	+	carbon source
[Ref.: #30894]	melibiose ChEBI	+	carbon source
[Ref.: #30894]	nitrate ChEBI	+	reduction
[Ref.: #30894]	raffinose ChEBI	+	carbon source
[Ref.: #30894]	rhamnose ChEBI	+	carbon source
[Ref.: #30894]	salicin ChEBI	+	carbon source
[Ref.: #30894]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30894]	acid phosphatase	+	3.1.3.2
[Ref.: #30894]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30894]	catalase	+	1.11.1.6
[Ref.: #30894]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20735]	Sample type/isolated from	soil
[Ref.: #20735]	Geographic location (country and/or sea, region)	Kanchanaburi
[Ref.: #20735]	Country	Thailand
[Ref.: #20735]	Country ISO 3 Code	THA
[Ref.: #20735]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20735]	Planobispora siamensis strain A-T 4600 16S ribosomal RNA gene, partial sequence	HQ599197	1429	ENA	936338 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planobispora siamensis NBRC 107568	GCA_016863175	contig	GenBank	936338 tax ID	*
[Ref.: #66792]	Planobispora siamensis strain NBRC 107568	936338.3	wgs	PATRIC	936338 tax ID	*

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GC-content

70.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planobispora siamensis strain NBRC 107568 PATRIC: 936338.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planobispora siamensis strain NBRC 107568 PATRIC: 936338.3
[Ref.: #69480]	motile	yes	69.319	yes
[Ref.: #69480]	flagellated	no	89.281	no
[Ref.: #69480]	gram-positive	yes	86.46	yes
[Ref.: #69480]	anaerobic	no	98.672	yes
[Ref.: #69480]	halophile	no	91.808	no
[Ref.: #69480]	spore-forming	yes	90.755	yes
[Ref.: #69480]	glucose-util	yes	89.425	yes
[Ref.: #69480]	aerobic	yes	87.819	yes
[Ref.: #69480]	thermophile	no	98.117	yes
[Ref.: #69480]	glucose-ferment	no	91.504	no

Availability in culture collections External links

[Ref.: #20735]

Culture collection no.

DSM 46704, BCC 39469, NBRC 107568

[Ref.: #88477]

SI-ID 407606

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planobispora takensis sp. nov., isolated from soil.	Ngaemthao W, Suriyachadkun C, Chunhametha S, Niemhom N, Thawai C, Sanglier JJ	Int J Syst Evol Microbiol	10.1099/ijs.0.057968-0	2014	*
Phylogeny	Planobispora siamensis sp. nov., isolated from soil.	Ngaemthao W, Suriyachadkun C, Chunhametha S, Tamura T, Sanglier JJ	Int J Syst Evol Microbiol	10.1099/ijs.0.046946-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20735

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46704

#30894

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27224 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88477

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407606.1 )

#27224

IJSEM 2649 2013 ( DOI 10.1099/ijs.0.046946-0 , PubMed 23291889 )

* These data were automatically processed and therefore are not curated

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Planobispora siamensis strain NBRC 107568

Planobispora siamensis strain NBRC 107568

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