Nonomuraea harbinensis (DSM 45887, CGMCC 4.7106, NEAU-yn31)

Name: Nonomuraea harbinensis (DSM 45887, CGMCC 4.7106, NEAU-yn31)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24631

Type strain

Strain Designation NEAU-yn31

Culture col. no. DSM 45887 CGMCC 4.7106 NEAU-yn31 JCM 33042

NCBI tax ID(s) 1286938

Special Collections DSMZ JCM

History <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-yn31 <- S. Wang, Harbin,China CGMCC 4.7106 <-- S. Wang et al.; Northeast Agric. Univ., China; NEAU-yn31.

Links

Nonomuraea harbinensis NEAU-yn31 is a bacterium that was isolated from soil from a waste water discharge site of a pesticide factory.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403044

DSM 45887

@ref 20215

Last LPSN update 2026-02-09 11:24:01

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Nonomuraea

Species Nonomuraea harbinensis

Full scientific name Nonomuraea harbinensis Wang et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.9
125439		90

Multimedia

@ref:	20691
multimedia content:	DSM_45887.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45887.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
20691	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
20691	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
20691	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
20691	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20691	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.2

Observation

67770

Observationquinones: MK-9(H₂), MK-9(H₄), MK-9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Waste	#Wastewater
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
20691	soil from a waste water discharge site of a pesticide factory	Heilongjiang Province, Harbin (45° 45' N, 126° 41' E)	China	CHN	Asia	45.75	126.683 45.75/126.683
67770	Waste water discharge site of a pesticide factory in Harbin	north China	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20691	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4265594v1 assembly for Nonomuraea harbinensis CGMCC 4.7106	scaffold	GCA_042655945			1286938	46.28
66792	ASM1939638v1 assembly for Nonomuraea harbinensis CGMCC 4.7106	scaffold	GCA_019396385	1286938.3	8068014133	1286938	44.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20691	Nonomuraea harbinensis strain NEAU-yn31 16S ribosomal RNA gene, partial sequence	KC306503	1519		1286938

GC content

@ref	GC-content (mol%)	Method
20691	68.0	thermal denaturation, midpoint method (Tm)
67770	67.76-68.24	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nonomuraea harbinensis CGMCC 4.7106
NCBI: GCA_019396385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.60	no
125439	motility	BacteriaNetⓘ	no	90.00	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nonomuraea harbinensis CGMCC 4.7106
NCBI: GCA_019396385.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.98	no
125438	anaerobic	anaerobicⓘ	no	94.36	no
125438	aerobic	aerobicⓘ	yes	85.23	no
125438	spore-forming	spore-formingⓘ	yes	89.46	no
125438	thermophilic	thermophileⓘ	no	91.00	yes
125438	flagellated	motile2+ⓘ	no	86.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	List of new names and new combinations previously effectively, but not validly, published.	Oren A, Garrity GM.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002278	2017
Phylogeny	Nonomuraea guangzhouensis sp. nov., and Nonomuraea harbinensis sp. nov., two novel actinomycetes isolated from soil.	Wang S, Liu C, Zhang Y, Zhao J, Zhang X, Yang L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0058-3	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20691	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45887
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nonomuraea harbinensis (DSM 45887, CGMCC 4.7106, NEAU-yn31)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042655945

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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