Name: Streptomyces barkulensis RC 1831
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24626

Type strain:

Species: Streptomyces barkulensis

Strain Designation: RC 1831

Culture col. no.: DSM 42082, JCM 18754

Strain history: V. Raina RC 1831.

NCBI tax ID(s): 1257026 (species)

Section

Streptomyces barkulensis RC 1831 is a spore-forming, mesophilic bacterium that was isolated from estuarine brackish water sediment of a fish dumping yard.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces barkulensis**
	Full Scientific Name (LPSN)	Streptomyces barkulensis Ray et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %96.628

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.998

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21055]	Sample type/isolated from	estuarine brackish water sediment of a fish dumping yard
[Ref.: #21055]	Geographic location (country and/or sea, region)	Odisha, Chilika Lake (19° 71' N 85° 19' E), Barkul village
[Ref.: #21055]	Country	India
[Ref.: #21055]	Country ISO 3 Code	IND
[Ref.: #21055]	Continent	Asia
[Ref.: #21055]	Geographic location	20.1833°/85.3167°

[Ref.: #67770]	Sample type/isolated from	Sediment of a fish dumping yard at Barkul Village near Chilika Lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Odisha
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Other	#Decomposing animal
#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Sediment
#Host	#Fishes	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21055]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21055]	Streptomyces barkulensis strain RC 1831 from India 16S ribosomal RNA gene, partial sequence	JQ862602	1428	ENA	1257026 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces barkulensis RC 1831	GCA_002811705	scaffold	GenBank	1257026 tax ID
[Ref.: #67770]	Streptomyces barkulensis RC 1831	GCA_002843305	scaffold	GenBank	1257026 tax ID

[Ref.: #21055]

GC-content

66.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces barkulensis RC 1831 NCBI: GCA_002843305.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces barkulensis RC 1831 NCBI: GCA_002811705.1
[Ref.: #69480]	flagellated	no	98.041	no
[Ref.: #69480]	gram-positive	yes	89.091	no
[Ref.: #69480]	anaerobic	no	98.403	no
[Ref.: #69480]	halophile	no	81.275	no
[Ref.: #69480]	spore-forming	yes	94.664	no
[Ref.: #69480]	glucose-util	yes	87.101	no
[Ref.: #69480]	aerobic	yes	85.676	no
[Ref.: #69480]	thermophile	no	96.123	no
[Ref.: #69480]	motile	no	95.337	no
[Ref.: #69480]	glucose-ferment	no	86.38	no
[Ref.: #69480]	flagellated	no	98.041	no
[Ref.: #69480]	gram-positive	yes	89.091	no
[Ref.: #69480]	anaerobic	no	98.403	no
[Ref.: #69480]	halophile	no	81.275	no
[Ref.: #69480]	spore-forming	yes	94.664	no
[Ref.: #69480]	glucose-util	yes	87.101	no
[Ref.: #69480]	aerobic	yes	85.676	no
[Ref.: #69480]	thermophile	no	96.123	no
[Ref.: #69480]	motile	no	95.337	no
[Ref.: #69480]	glucose-ferment	no	86.38	no

Availability in culture collections External links

[Ref.: #21055]

Culture collection no.

DSM 42082, JCM 18754

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces desertarenae sp. nov., a novel actinobacterium isolated from a desert sample.	Li LY, Yang ZW, Asem MD, Fang BZ, Salam N, Alkhalifah DHM, Hozzein WN, Nie GX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-018-1163-0	2018	*
Phylogeny	Streptomyces salilacus sp. nov., an actinomycete isolated from a salt lake.	Luo XX, Gao GB, Xia ZF, Chen ZJ, Wan CX, Zhang LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.002703	2018	*
Phylogeny	Streptomyces carminius sp. nov., a novel actinomycete isolated from Sophora alopecuroides in Xinjiang, China.	Wang Y, Xia Z, Liu Z, Wan C, Luo X, Zhang L	Antonie Van Leeuwenhoek	10.1007/s10482-018-1069-x	2018	*
Phylogeny	Streptomyces chitinivorans sp. nov., a chitinolytic strain isolated from estuarine lake sediment.	Ray L, Mishra SR, Panda AN, Das S, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina V	Int J Syst Evol Microbiol	10.1099/ijsem.0.001176	2016	*
Phylogeny	Streptomyces barkulensis sp. nov., isolated from an estuarine lake.	Ray L, Mishra SR, Panda AN, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina V	Int J Syst Evol Microbiol	10.1099/ijs.0.056614-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21055

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42082

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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