Name: Streptomyces calidiresistens DSM 42108
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24615

Type strain:

Species: Streptomyces calidiresistens

Culture col. no.: DSM 42108, BCRC 16955, JCM 19629, YIM 78087

Strain history: W.-J. Li YIM 78087.

NCBI tax ID(s): 1485586 (species)

SI-ID 398944

DSM 42108

Section

Streptomyces calidiresistens DSM 42108 is a spore-forming, mesophilic bacterium that was isolated from hot spring sediment.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces calidiresistens**
	Full Scientific Name (LPSN)	Streptomyces calidiresistens Duan et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.163

Multimedia content

[Ref.: #21044]

Caption:

Medium 252 28°C

[Ref.: #21044]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21044]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #21044]

Culture medium growth

[Ref.: #21044]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21044]

Culture medium composition

expand / minimize

[Ref.: #21044]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #21044]

Culture medium growth

[Ref.: #21044]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21044]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21044]			growth	28 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #21044]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21044]	Sample type/isolated from	hot spring sediment
[Ref.: #21044]	Geographic location (country and/or sea, region)	Yunnan Province, Tengchong county, Hehua hot spring
[Ref.: #21044]	Country	China
[Ref.: #21044]	Country ISO 3 Code	CHN
[Ref.: #21044]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment from Hehua hot spring
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tengchong, Yunnan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21044]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21044]	Streptomyces calidiresistens strain YIM 78087 16S ribosomal RNA gene, partial sequence	KJ361473	1588	ENA	1485586 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces calidiresistens DSM 42108	GCA_014141525	contig	GenBank	1485586 tax ID	*
[Ref.: #66792]	Streptomyces calidiresistens strain DSM 42108	1485586.3	wgs	PATRIC	1485586 tax ID	*

[Ref.: #21044]	GC-content	73.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	73 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces calidiresistens strain DSM 42108 PATRIC: 1485586.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces calidiresistens strain DSM 42108 PATRIC: 1485586.3
[Ref.: #69480]	motile	no	93.678	no
[Ref.: #69480]	gram-positive	yes	92.681	no
[Ref.: #69480]	anaerobic	no	98.92	no
[Ref.: #69480]	aerobic	yes	92.173	no
[Ref.: #69480]	halophile	no	71.983	no
[Ref.: #69480]	spore-forming	yes	86.243	no
[Ref.: #69480]	glucose-util	yes	89.294	no
[Ref.: #69480]	flagellated	no	97.056	no
[Ref.: #69480]	thermophile	no	90.625	yes
[Ref.: #69480]	glucose-ferment	no	89.253	no

Availability in culture collections External links

[Ref.: #21044]

Culture collection no.

DSM 42108, BCRC 16955, JCM 19629, YIM 78087

[Ref.: #88459]

SI-ID 398944

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces alkaliterrae sp. nov., isolated from an alkaline soil, and emended descriptions of Streptomyces alkaliphilus, Streptomyces calidiresistens and Streptomyces durbertensis.	Swiecimska M, Golinska P, Nouioui I, Wypij M, Rai M, Sangal V, Goodfellow M	Syst Appl Microbiol	10.1016/j.syapm.2020.126153	2020	*
Phylogeny	Streptomyces calidiresistens sp. nov., isolated from a hot spring sediment.	Duan YY, Ming H, Dong L, Yin YR, Zhang Y, Zhou EM, Liu L, Nie GX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0180-x	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21044

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42108

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88459

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398944.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces calidiresistens in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Streptomyces calidiresistens strain DSM 42108

Streptomyces calidiresistens strain DSM 42108

Change proposal

Change proposal