Name: Streptococcus anginosus subsp. whileyi SK1267
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24605

Type strain:

Species: Streptococcus anginosus subsp. whileyi

Strain Designation: SK1267

Culture col. no.: DSM 25818, CCUG 39159, CIP 110790

Strain history: CIP <- 2014, DSMZ <- M. Kilian, Aarhus Univ., Aarhus, Denmark: strain SK1267

NCBI tax ID(s): 1095729 (strain), 1272910 (subspecies)

SI-ID 108742

CCUG 39159, DSM 25818, CIP 110790

Other strains from Streptococcus anginosus subsp. whileyi

S. anginosus subsp. whileyi CCUG 32021
S. anginosus subsp. whileyi CCUG 32453
S. anginosus subsp. whileyi CCUG 35271
S. anginosus subsp. whileyi CCUG 62385
S. anginosus subsp. whileyi CCUG 62386

Section

Streptococcus anginosus subsp. whileyi SK1267 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from human throat.

coccus-shaped
Gram-positive
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Streptococcus*
	Species	**Streptococcus anginosus subsp. whileyi**
	Full Scientific Name (LPSN)	Streptococcus anginosus subsp. whileyi Jensen et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30730]	Gram stain	positive
[Ref.: #116384]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30730]	Cell length	0.75 µm

[Ref.: #30730]	Cell width	0.75 µm

[Ref.: #30730]	Cell shape	coccus-shaped

[Ref.: #30730]	Motility	no
[Ref.: #116384]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.469

[Ref.: #21035]	Type of hemolysis	beta
[Ref.: #21035]	Hemolysis ability	1
[Ref.: #21035]	Incubation period	1-2 days

[Ref.: #30730]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36496]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #36496]

Culture medium growth

[Ref.: #36496]

Culture medium composition

expand / minimize

[Ref.: #21035]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #21035]

Culture medium growth

[Ref.: #21035]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21035]

Culture medium composition

expand / minimize

[Ref.: #21035]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #21035]

Culture medium growth

[Ref.: #21035]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21035]

Culture medium composition

expand / minimize

[Ref.: #116384]

Culture medium

CIP Medium 45

[Ref.: #116384]

Culture medium growth

[Ref.: #116384]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #21035]	growth	37 °C
[Ref.: #36496]	growth	37 °C
[Ref.: #54676]	growth	37 °C

[Ref.: #21035]	Temperature range	mesophilic
[Ref.: #36496]	Temperature range	mesophilic
[Ref.: #54676]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21035]	Oxygen tolerance	microaerophile
[Ref.: #30730]	Oxygen tolerance	microaerophile
[Ref.: #54676]	Oxygen tolerance	microaerophile

[Ref.: #30730]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

[Ref.: #30730]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68370]	arginine ChEBI	+	hydrolysis	* from API 20STR, API rID32STR
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68370]	D-mannitol ChEBI	-	builds acid from	* from API 20STR, API rID32STR
[Ref.: #68370]	D-ribose ChEBI	-	builds acid from	* from API 20STR, API rID32STR
[Ref.: #68370]	D-sorbitol ChEBI	-	builds acid from	* from API 20STR
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #30730]	glucose ChEBI	+	carbon source
[Ref.: #68370]	glycogen ChEBI	+	builds acid from	* from API 20STR
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68370]	hippurate ChEBI	-	hydrolysis	* from API 20STR, API rID32STR
[Ref.: #68370]	inulin ChEBI	-	builds acid from	* from API 20STR
[Ref.: #68370]	L-arabinose ChEBI	-	builds acid from	* from API 20STR, API rID32STR
[Ref.: #30730]	lactose ChEBI	+	carbon source
[Ref.: #68381]	lactose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	maltose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	pullulan ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68370]	raffinose ChEBI	-	builds acid from	* from API 20STR, API rID32STR
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68370]	starch ChEBI	-	builds acid from	* from API 20STR
[Ref.: #68381]	sucrose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68370]	trehalose ChEBI	+	builds acid from	* from API 20STR, API rID32STR
[Ref.: #68381]	urea ChEBI	-	hydrolysis	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68370]		acetoin ChEBI	yes	* from API 20STR, API rID32STR

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68381]		acetoin ChEBI	+	* from API rID32STR, API 20STR

	Enzyme	Enzyme activity	EC number
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #68381]	alkaline phosphatase	+	3.1.3.1	* from API rID32STR, API 20STR
[Ref.: #68381]	alpha-galactosidase	-	3.2.1.22	* from API rID32STR, API 20STR
[Ref.: #68381]	arginine dihydrolase	+	3.5.3.6	* from API rID32STR, API 20STR
[Ref.: #68381]	beta-galactosidase	-	3.2.1.23	* from API rID32STR, API 20STR
[Ref.: #68381]	beta-glucosidase	+	3.2.1.21	* from API rID32STR
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR, API 20STR
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #21035]	catalase	+	1.11.1.6
[Ref.: #21035]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68381]	glycyl tryptophan arylamidase	-		* from API rID32STR
[Ref.: #68370]	leucine arylamidase	+	3.4.11.1	* from API 20STR
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32STR
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR, API 20STR
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

API® 20STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Acetoin production (Voges Proskauer test)VP	Hippuric acid hydrolysisHIP	Esculin hydrolysis/beta-glucosidaseESC	Pyrrolidonyl arylamidasePYRA	alpha-Galactosidasealpha GAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	Alkaline phosphatasePAL	Leucine arylamidaseLAP	Arginine dihydrolaseADH	Acid from D-riboseRIB	Acid from L-arabinoseARA	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	beta hemolysis presentbeta HEM
[Ref.: #21035]	855	+	-	+/-	-	-	-	-	+	+	+	-	-	-	-	+	+	-	-	-	+	not determinedn.d.
[Ref.: #21035]	854	+	-	+	-	-	-	-	+	+	+	-	-	-	-	+/-	+	-	-	-	+	not determinedn.d.

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #21035]	10594	+	+	+	-	-	+	-	-	-	+	+	-	+	-	-	-	+	+	-	-	-	-	-	-	+	+	-	-	+	-	-	-
[Ref.: #21035]	10593	+	+	+	-	-	+	-	-	-	+	+	-	+	-	-	-	+	+	-	-	-	-	-	-	+	+	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21035]	Sample type/isolated from	human throat
[Ref.: #21035]	Geographic location (country and/or sea, region)	Linköping
[Ref.: #21035]	Country	Sweden
[Ref.: #21035]	Country ISO 3 Code	SWE
[Ref.: #21035]	Continent	Europe

[Ref.: #54676]	Sample type/isolated from	Human throat
[Ref.: #54676]	Sampling date	1998-03-01
[Ref.: #54676]	Geographic location (country and/or sea, region)	Linköping
[Ref.: #54676]	Country	Sweden
[Ref.: #54676]	Country ISO 3 Code	SWE
[Ref.: #54676]	Continent	Europe

[Ref.: #116384]	Sample type/isolated from	Human, Throat
[Ref.: #116384]	Geographic location (country and/or sea, region)	Linköping
[Ref.: #116384]	Country	Sweden
[Ref.: #116384]	Country ISO 3 Code	SWE
[Ref.: #116384]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Throat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN787193 (>99% sequence identity) for Streptococcus from Microbeatlas

Aquatic Samples	2504
Soil Samples	1377
Animal Samples	107283
Plant Samples	731
Total Samples	111895

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21035]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116384]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21035]	Streptococcus anginosus subsp. whileyi CCUG 39159 16S ribosomal RNA gene, partial sequence	JN787193	1404	ENA	1095729 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptococcus anginosus subsp. whileyi CCUG 39159	GCA_000257765	contig	GenBank	1095729 tax ID	*
[Ref.: #66792]	Streptococcus anginosus strain FDAARGOS_1155	1328.225	complete	PATRIC	1328 tax ID	*
[Ref.: #66792]	Streptococcus anginosus subsp. whileyi CCUG 39159	1095729.3	wgs	PATRIC	1095729 tax ID	*
[Ref.: #66792]	Streptococcus sp. P1L01	2748301.3	wgs	PATRIC	2748301 tax ID	*
[Ref.: #66792]	Streptococcus anginosus CCUG 39159	2558860192	draft	JGI IMG/M	1095729 tax ID	*

[Ref.: #21035]	GC-content	38.5 mol%	sequence analysis
[Ref.: #30730]	GC-content	38.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptococcus anginosus strain FDAARGOS_1155 strain Not applicable PATRIC: 1328.225
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptococcus anginosus strain FDAARGOS_1155 strain Not applicable PATRIC: 1328.225
[Ref.: #69480]	motile	no	96.774	yes
[Ref.: #69480]	gram-positive	yes	94.121	yes
[Ref.: #69480]	anaerobic	no	93.985	no
[Ref.: #69480]	halophile	yes	84.625	no
[Ref.: #69480]	spore-forming	no	93.848	yes
[Ref.: #69480]	glucose-util	yes	88.113	yes
[Ref.: #69480]	aerobic	no	97.164	yes
[Ref.: #69480]	flagellated	no	97.518	no
[Ref.: #69480]	thermophile	no	99.698	yes
[Ref.: #69480]	glucose-ferment	yes	86.003	no

Availability in culture collections External links

[Ref.: #21035]

Culture collection no.

DSM 25818, CCUG 39159, CIP 110790

[Ref.: #88450]

SI-ID 108742

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptococcus vaginalis sp. nov., a novel bacterial species isolated from vaginal swabs of a pregnant woman with diabetes.	Chao AS, Lin CY, Chao A, Lee YS, Chang YC, Wu HC, Dai YJ, Liao WQ, Kao FC, Chen YS	Arch Microbiol	10.1007/s00203-021-02532-y	2021	*
Phylogeny	Taxonomy of the Anginosus group of the genus Streptococcus and description of Streptococcus anginosus subsp. whileyi subsp. nov. and Streptococcus constellatus subsp. viborgensis subsp. nov.	Jensen A, Hoshino T, Kilian M	Int J Syst Evol Microbiol	10.1099/ijs.0.043232-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21035

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25818

#30730

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27061 (see below)

#36496 ; Curators of the CIP;
#54676 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 39159

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68370

Automatically annotated from API 20STR .

#68381

Automatically annotated from API rID32STR .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88450

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID108742.1 )

#116384 Collection of Institut Pasteur ; Curators of the CIP; CIP 110790

#27061

IJSEM 2506 2013 ( DOI 10.1099/ijs.0.043232-0 , PubMed 23223817 )

* These data were automatically processed and therefore are not curated

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Search for species Streptococcus anginosus subsp. whileyi in external resources:
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Streptococcus anginosus strain FDAARGOS_1155 strain Not applicable

Streptococcus anginosus strain FDAARGOS_1155 strain Not applicable

Change proposal

Change proposal