Name: Rheinheimera aquimaris SW-353
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2460

Type strain:

Species: Rheinheimera aquimaris

Strain Designation: SW-353

Culture col. no.: DSM 22684, JCM 14331, KCTC 12840, CGMCC 1.10346

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 412437 (species)

SI-ID 309497

JCM 14331, KCTC 12840, DSM 22684

Section

Rheinheimera aquimaris SW-353 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Rheinheimera*
	Species	**Rheinheimera aquimaris**
	Full Scientific Name (LPSN)	Rheinheimera aquimaris Yoon et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32061]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #32061]	Cell length	2.65 µm

[Ref.: #32061]	Cell width	0.5 µm

[Ref.: #32061]	Cell shape	rod-shaped

[Ref.: #32061]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16461]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16461]

Culture medium growth

[Ref.: #16461]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16461]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16461]	growth	37 °C
[Ref.: #32061]	growth	4.0-43 °C
[Ref.: #32061]	optimum	33.5 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #16461]	Temperature range	mesophilic
[Ref.: #32061]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32061]			optimum	7.5
[Ref.: #32061]			growth	5.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32061]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32061]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32061]		NaCl		growth	0.0-8.0	%
[Ref.: #32061]		NaCl		optimum	2	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32061]	acetate ChEBI	+	carbon source
[Ref.: #32061]	D-tryptophan ChEBI	+	carbon source
[Ref.: #32061]	esculin ChEBI	+	hydrolysis
[Ref.: #32061]	glucose ChEBI	+	carbon source
[Ref.: #32061]	glycogen ChEBI	+	carbon source
[Ref.: #32061]	maltose ChEBI	+	carbon source
[Ref.: #32061]	mannose ChEBI	+	carbon source
[Ref.: #32061]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32061]	nitrate ChEBI	+	reduction
[Ref.: #32061]	pyruvate ChEBI	+	carbon source
[Ref.: #32061]	succinate ChEBI	+	carbon source
[Ref.: #32061]	trehalose ChEBI	+	carbon source
[Ref.: #32061]	tween 20 ChEBI	+	carbon source
[Ref.: #32061]	tween 40 ChEBI	+	carbon source
[Ref.: #32061]	tween 60 ChEBI	+	carbon source
[Ref.: #32061]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32061]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16461]	Sample type/isolated from	seawater
[Ref.: #16461]	Geographic location (country and/or sea, region)	East Sea, Hwajinpo
[Ref.: #16461]	Country	Republic of Korea
[Ref.: #16461]	Country ISO 3 Code	KOR
[Ref.: #16461]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater

[Ref.: #67771]	Sample type/isolated from	From sea water
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF076757 (>99% sequence identity) for Rheinheimera from Microbeatlas

Aquatic Samples	58
Soil Samples	11
Animal Samples	18
Plant Samples	2
Total Samples	89

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16461]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16461]	Rheinheimera aquimaris strain SW-353 16S ribosomal RNA gene, partial sequence	EF076757	1492	ENA	412437 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rheinheimera aquimaris KCTC 12840	GCA_020531985	contig	GenBank	412437 tax ID	*

[Ref.: #16461]	GC-content	50.1-50.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32061]	GC-content	50.1 mol%
[Ref.: #67770]	GC-content	50.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rheinheimera aquimaris KCTC 12840 NCBI: GCA_020531985.1
[Ref.: #69480]	flagellated	yes	84.239	no
[Ref.: #69480]	gram-positive	no	99.116	yes
[Ref.: #69480]	anaerobic	no	97.148	no
[Ref.: #69480]	aerobic	yes	91.145	yes
[Ref.: #69480]	halophile	no	80.602	no
[Ref.: #69480]	spore-forming	no	96.164	no
[Ref.: #69480]	motile	yes	91.811	yes
[Ref.: #69480]	thermophile	no	99.447	no
[Ref.: #69480]	glucose-util	yes	90.026	no
[Ref.: #69480]	glucose-ferment	no	75.443	no

Availability in culture collections External links

[Ref.: #16461]

Culture collection no.

DSM 22684, JCM 14331, KCTC 12840, CGMCC 1.10346

[Ref.: #72004]

SI-ID 309497

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rheinheimera maricola sp. nov., isolated from seawater of the Yellow Sea.	Kim KH, Baek JH, Wenting R, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.005423	2022	*
Phylogeny	Rheinheimera lutimaris sp. nov., a marine bacterium isolated from coastal sediment.	Yu Q, Qi Y, Pu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005143	2021	*
Phylogeny	Rheinheimera gaetbuli sp. nov., a Marine Bacterium Isolated from a Tidal Flat.	Baek K, Jeon CO	Curr Microbiol	10.1007/s00284-015-0956-x	2015	*
Phylogeny	Rheinheimera japonica sp. nov., a novel bacterium with antimicrobial activity from seashore sediments of the Sea of Japan.	Romanenko LA, Tanaka N, Svetashev VI, Kalinovskaya NI, Mikhailov VV	Arch Microbiol	10.1007/s00203-015-1095-2	2015	*
Phylogeny	Rheinheimera nanhaiensis sp. nov., isolated from marine sediments, and emended description of the genus Rheinheimera Brettar et al. 2002 emend. Merchant et al. 2007.	Li HJ, Zhang XY, Zhang YJ, Zhou MY, Gao ZM, Chen XL, Dang HY, Zhang YZ	Int J Syst Evol Microbiol	10.1099/ijs.0.019281-0	2010	*
Phylogeny	Rheinheimera aquimaris sp. nov., isolated from seawater of the East Sea in Korea.	Yoon JH, Park SE, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.64898-0	2007	*

References

#16461

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22684

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32061

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28309 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72004

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309497.1 )

#28309

IJSEM 1386 2007 ( DOI 10.1099/ijs.0.64898-0 , PubMed 17625162 )

* These data were automatically processed and therefore are not curated

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Rheinheimera aquimaris KCTC 12840

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