Nosocomiicoccus massiliensis (DSM 26222, CSUR P246, NP2)

Name: Nosocomiicoccus massiliensis (DSM 26222, CSUR P246, NP2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24598

Type strain

Strain Designation NP2

Culture col. no. DSM 26222 CSUR P246 NP2

NCBI tax ID(s) 1232430

Special Collections DSMZ Cadoret human gut

Links

Nosocomiicoccus massiliensis NP2 is a mesophilic prokaryote that was isolated from feces of an AIDS-infected human patient.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397029

DSM 26222

@ref 20215

Last LPSN update 2025-12-16 09:52:53

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Nosocomiicoccus

Species Nosocomiicoccus massiliensis

Full scientific name Nosocomiicoccus massiliensis Mishra et al. 2016

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21192	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21192	positive	growth	37	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Disease
#Infection	#Patient
#Host	#Human
#Host Body Product	#Gastrointestinal tract

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21192	feces of an AIDS-infected human patient	Marseille	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence JX424771 (>99% sequence identity) for Nosocomiicoccus massiliensis subclade from Microbeatlas

Aquatic Samples	712
Soil Samples	313
Animal Samples	9210
Plant Samples	122
Total Samples	10357

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21192	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Nosocomiicoccus_NP2_v1 assembly for Nosocomiicoccus massiliensis NP2	contig	GCA_000438455	1232430.3	2600255096	1232430	21.19

Genome browser: GCA_000438455

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21192	Nosocomiicoccus massiliensis 16S ribosomal RNA gene, partial sequence	JX424771	1523		1232430

GC content

@ref	GC-content (mol%)	Method
21192	36.40	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nosocomiicoccus massiliensis NP2
NCBI: GCA_000438455

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	79.10	no
125439	motility	BacteriaNetⓘ	yes	65.20	no
125439	gram_stain	BacteriaNetⓘ	variable	71.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	79.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Non-contiguous finished genome sequence and description of Nosocomiicoccus massiliensis sp. nov.	Mishra AK, Edouard S, Dangui NP, Lagier JC, Caputo A, Blanc-Tailleur C, Ravaux I, Raoult D, Fournier PE.	Stand Genomic Sci	10.4056/sigs.4378121	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21192	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26222
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nosocomiicoccus massiliensis (DSM 26222, CSUR P246, NP2)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000438455

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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