Staphylococcus petrasii (DSM 26618, CCM 8494, CCUG 62657)

Name: Staphylococcus petrasii (DSM 26618, CCM 8494, CCUG 62657)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24597

Type strain

Strain Designation SEQ110

Culture col. no. DSM 26618 CCM 8494 CCUG 62657 LMG 26879 SEQ110

NCBI tax ID(s) 1276936

Special Collections DSMZ CCUG Literature strains

History DSMZ <- A. De Bel, UZ Brussel, Belgium; SEQ110 <- D. Piéard

Links

Staphylococcus petrasii SEQ110 is a facultative anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from human blood.

Gram-positive coccus-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 379433

NCTC 13835,NCTC 13830,LMG 26879,CCUG 62657,DSM 26618,CCM 8494

@ref 20215

Last LPSN update 2026-05-29 08:30:39

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus petrasii

Full scientific name Staphylococcus petrasii Pantucek et al. 2013

Synonyms (2)

Staphylococcus petrasii subsp. jettensis
Staphylococcus jettensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30792	positive	3.5 µm	3.5 µm	coccus-shaped

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Incubation period
20839	beta	1	1-2 days

Pigmentation

30792

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20839	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
20839	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20839	positive	growth	37
62878	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30792	facultative anaerobe
62878	aerobe
125439	facultative anaerobe	91.743

Spore formation

@ref	Spore formation	Confidence
30792
125439		91.17

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68375	22599 ChEBI	arabinose	-	fermentation	from API ID32STA
68375	29016 ChEBI	arginine	+	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68375	15824 ChEBI	D-fructose	+	fermentation	from API ID32STA
68375	17634 ChEBI	D-glucose	+	fermentation	from API ID32STA
68375	16899 ChEBI	D-mannitol	-	fermentation	from API ID32STA
68375	16024 ChEBI	D-mannose	-	fermentation	from API ID32STA
68375	16988 ChEBI	D-ribose	-	fermentation	from API ID32STA
68375	4853 ChEBI	esculin	-	hydrolysis	from API ID32STA
30792	28757 ChEBI	fructose	+	carbon source
30792	17234 ChEBI	glucose	+	carbon source
68375	17716 ChEBI	lactose	-	fermentation	from API ID32STA
30792	17306 ChEBI	maltose	+	carbon source
68375	17306 ChEBI	maltose	+	fermentation	from API ID32STA
68375	59640 ChEBI	N-acetylglucosamine	-	fermentation	from API ID32STA
30792	17632 ChEBI	nitrate	+	reduction
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
30792	17992 ChEBI	sucrose	+	carbon source
68375	17992 ChEBI	sucrose	+	fermentation	from API ID32STA
30792	27082 ChEBI	trehalose	+	carbon source
68375	32528 ChEBI	turanose	-	fermentation	from API ID32STA
68375	16199 ChEBI	urea	-	hydrolysis	from API ID32STA

Antibiotic resistance

@ref	ChEBI	Group ID	Metabolite	Is sensitive	Sensitivity conc.
68375	28368	0	novobiocin		1.8 µg	from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68375	15688 ChEBI	acetoin		from API ID32STA

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68375	15688 ChEBI	acetoin	+	from API ID32STA

Enzymes

@ref	Value	Activity	Ec
68375	alkaline phosphatase	-	3.1.3.1	from API ID32STA
68375	arginine dihydrolase	+	3.5.3.6	from API ID32STA
68375	beta-galactosidase	-	3.2.1.23	from API ID32STA
68375	beta-glucosidase	-	3.2.1.21	from API ID32STA
68375	beta-glucuronidase	-	3.2.1.31	from API ID32STA
20839	catalase	+	1.11.1.6
30792	catalase	+	1.11.1.6
20839	cytochrome-c oxidase	-	1.9.3.1
68375	L-arginine arylamidase	-		from API ID32STA
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
68375	pyrrolidonyl arylamidase	+	3.4.19.3	from API ID32STA
68375	urease	-	3.5.1.5	from API ID32STA

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
20839	-	+	-	-	+	+	-	+	-	+	-	-	-	-	+	+	-	-	-	+	-	+	-	-	-	-
20839	-	+	-	-	+	+	-	+	-	+/-	-	-	-	-	+	+	-	-	-	+	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
20839	human blood	Homo sapiens		Jette	Belgium	BEL	Europe
62878	Human blood	Homo sapiens	2010-11-15	Brussels	Belgium	BEL	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20839	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM474585v1 assembly for Staphylococcus petrasii CCM 8494	scaffold	GCA_004745855	1077965.5	8118307314	1276936	66.64
66792	ASM290210v1 assembly for Staphylococcus petrasii CCUG 62657	scaffold	GCA_002902105	1077965.3	8109095678	1276936	24.94

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20839	Staphylococcus jettensis strain SEQ110 16S ribosomal RNA gene, partial sequence	JN092118	1444	1077965
124043	Staphylococcus petrasii subsp. jettensis strain DSM 26618 16S ribosomal RNA gene, partial sequence.	MF678952	1283	1276936
124043	Staphylococcus petrasii subsp. jettensis strain DSM 26618 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence.	MF678896	4328	1276936

GC content

@ref	GC-content (mol%)	Method
20839	33.8	high performance liquid chromatography (HPLC)
30792	33.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM474585v1 assembly for Staphylococcus petrasii CCM 8494
BV-BRC: 1077965.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.74	no
125439	gram_stain	BacteriaNetⓘ	positive	70.41	no
125439	spore_formation	BacteriaNetⓘ	no	91.17	no
125439	motility	BacteriaNetⓘ	no	79.16	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus petrasii CCM 8494
NCBI: GCA_004745855.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.74	yes
125438	anaerobic	anaerobicⓘ	no	99.93	no
125438	aerobic	aerobicⓘ	yes	69.44	no
125438	spore-forming	spore-formingⓘ	no	73.15	yes
125438	thermophilic	thermophileⓘ	no	98.30	no
125438	flagellated	motile2+ⓘ	no	71.03	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Sequences of 64 Type Strains of 50 Species and 25 Subspecies of the Genus Staphylococcus Rosenbach 1884.	Cole K, Foster D, Russell JE, Golubchik T, Llewelyn M, Wilson DJ, Crook D, Paul J, Modernising Medical Microbiology Consortium.	Microbiol Resour Announc	10.1128/mra.00062-19	2019
Phylogeny	Reclassification of Staphylococcus jettensis De Bel et al. 2013 as Staphylococcus petrasii subsp. jettensis subsp. nov. and emended description of Staphylococcus petrasii Pantucek et al. 2013.	De Bel A, Svec P, Petras P, Sedlacek I, Pantucek R, Echahidi F, Pierard D, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.064758-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20839	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26618
#27123	IJSEM 3250 2013 ( DOI 10.1099/ijs.0.044438-0 , PubMed 23456811 )
#30792	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27123
#62878	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62657
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68375	Automatically annotated from API ID32STA .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Staphylococcus petrasii (DSM 26618, CCM 8494, CCUG 62657)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API ID32STA

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004745855

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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