Name: Rheinheimera texasensis A62-14B
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2456

Type strain:

Species: Rheinheimera texasensis

Strain Designation: A62-14B

Culture col. no.: DSM 17496, ATCC BAA-1235

Strain history: <- R. J. C. McLean, Dept. Biol., TX State Univ., San Marcos, USA; A62-14B <- M. B. Barnes, Tulane Natl. Primate Res. Center, Louisiana

NCBI tax ID(s): 1123055 (strain), 306205 (species)

SI-ID 398011

DSM 17496

Special Collections

Section

Rheinheimera texasensis A62-14B is an anaerobe, Gram-negative, motile bacterium that was isolated from Spring Lake .

Gram-negative
motile
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Rheinheimera*
	Species	**Rheinheimera texasensis**
	Full Scientific Name (LPSN)	Rheinheimera texasensis Merchant et al. 2007

Synonym

"Pararheinheimera texasensis"

Information on morphological and physiological properties Morphology

[Ref.: #32153]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #32153]	Cell length	1.85 µm

[Ref.: #32153]	Cell width	0.75 µm

[Ref.: #32153]	Cell shape	rod-shaped

[Ref.: #32153]	Motility	yes

[Ref.: #32153]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7023]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7023]

Culture medium growth

[Ref.: #7023]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7023]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7023]	growth	30 °C
[Ref.: #32153]	growth	25-37 °C
[Ref.: #32153]	optimum	33.5 °C

	pH	Kind of pH		pH
[Ref.: #32153]			optimum	7.75
[Ref.: #32153]			growth	6.5-9.6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32153]

Oxygen tolerance

anaerobe

[Ref.: #32153]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %92.676
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32153]		NaCl		growth	0-1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32153]	arabinose ChEBI	+	carbon source
[Ref.: #32153]	cellobiose ChEBI	+	carbon source
[Ref.: #32153]	galactose ChEBI	+	carbon source
[Ref.: #32153]	glucose ChEBI	+	carbon source
[Ref.: #32153]	glycogen ChEBI	+	carbon source
[Ref.: #32153]	lactose ChEBI	+	carbon source
[Ref.: #32153]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32153]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32153]	nitrate ChEBI	+	reduction
[Ref.: #32153]	sucrose ChEBI	+	carbon source
[Ref.: #32153]	trehalose ChEBI	+	carbon source
[Ref.: #32153]	tween 20 ChEBI	+	carbon source
[Ref.: #32153]	tween 40 ChEBI	+	carbon source
[Ref.: #32153]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32153]	catalase	+	1.11.1.6
[Ref.: #32153]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32153]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7023]	Sample type/isolated from	Spring Lake (freshwater lake)
[Ref.: #7023]	Geographic location (country and/or sea, region)	Texas, San Marcos
[Ref.: #7023]	Country	USA
[Ref.: #7023]	Country ISO 3 Code	USA
[Ref.: #7023]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Spring

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7023]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7023]	Rheinheimera texasensis strain A62-14B 16S ribosomal RNA gene, complete sequence	AY701891	1447	GenBank ENA	306205 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rheinheimera texasensis DSM 17496	GCA_000711985	scaffold	GenBank ENA	1123055 tax ID	*
[Ref.: #66792]	Rheinheimera texasensis DSM 17496	1123055.3	wgs	PATRIC	1123055 tax ID	*
[Ref.: #66792]	Pararheinheimera texasensis DSM 17496	2565956515	draft	JGI IMG/M	1123055 tax ID	*

[Ref.: #7023]

GC-content

48.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pararheinheimera texasensis DSM 17496 DSM 17496 NCBI: GCA_000711985.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pararheinheimera texasensis DSM 17496 DSM 17496 NCBI: GCA_000711985.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	82.612	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	56.959	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.676	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.784	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	85.742	no

Availability in culture collections External links

[Ref.: #7023]

Culture collection no.

DSM 17496, ATCC BAA-1235

[Ref.: #72000]

SI-ID 398011

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rheinheimera sediminis sp. nov., a marine bacterium isolated from coastal sediment.	Yu Q, Qi Y, Zhang H, Pu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003917	2020	*
Phylogeny	Rheinheimera coerulea sp. nov., isolated from a freshwater creek, and emended description of genus Rheinheimera Brettar et al. 2002.	Sheu SY, Chen WT, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002838	2018	*
Phylogeny	Taxonomic description and genome sequence of Rheinheimera mesophila sp. nov., isolated from an industrial waste site.	Kumar A, Bajaj A, Mathan Kumar R, Kaur G, Kaur N, Kumar Singh N, Manickam N, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000471	2015	*
Phylogeny	Rheinheimera aquatica sp. nov., an antimicrobial activity producing bacterium isolated from freshwater culture pond.	Chen WM, Lin CY, Young CC, Sheu SY	J Microbiol Biotechnol	10.4014/jmb.1004.04048	2010	*
Phylogeny	Rheinheimera tangshanensis sp. nov., a rice root-associated bacterium.	Zhang X, Sun L, Qiu F, McLean RJ, Jiang R, Song W	Int J Syst Evol Microbiol	10.1099/ijs.0.65605-0	2008	*
Phylogeny	Rheinheimera texasensis sp. nov., a halointolerant freshwater oligotroph.	Merchant MM, Welsh AK, McLean RJC	Int J Syst Evol Microbiol	10.1099/ijs.0.65045-0	2007	*

References

#7023

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17496

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32153

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28396 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72000

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398011.1 )

#28396

IJSEM 2376 2007 ( DOI 10.1099/ijs.0.65045-0 , PubMed 17911314 )

* These data were automatically processed and therefore are not curated

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Pararheinheimera texasensis DSM 17496 DSM 17496

Pararheinheimera texasensis DSM 17496 DSM 17496

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