Name: Sphingobium jiangsuense BA-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24556

Type strain:

Species: Sphingobium jiangsuense

Strain Designation: BA-3

Culture col. no.: DSM 26189, CCTCC AB 201217, KACC 16433, KCTC 23196

Strain history: <- J. He, Key Lab. of Microbiological Engineering of Agricultural Environment, Nanjing Agricultural University; BA-3 <- X.-Q. Duan, Nanjing Agric. Univ., China

NCBI tax ID(s): 870476 (species)

SI-ID 407790

DSM 26189

Section

Sphingobium jiangsuense BA-3 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from activated sludge of a pyrethroid manufactoring facility.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Species	**Sphingobium jiangsuense**
	Full Scientific Name (LPSN)	Sphingobium jiangsuense Zhang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30137]	Gram stain	negative

[Ref.: #30137]	Cell length	1-1.2 µm

[Ref.: #30137]	Cell width	0.6-0.8 µm

[Ref.: #30137]	Motility	no

[Ref.: #30137]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20814]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20814]

Culture medium growth

[Ref.: #20814]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20814]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20814]	growth	28 °C
[Ref.: #30137]	growth	10-37 °C
[Ref.: #30137]	optimum	28 °C

[Ref.: #20814]	Temperature range	mesophilic
[Ref.: #30137]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30137]			optimum	7
[Ref.: #30137]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30137]

Oxygen tolerance

aerobe

[Ref.: #30137]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30137]		NaCl		growth	0-2	%
[Ref.: #30137]		NaCl		optimum	0.50	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30137]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30137]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #30137]	mannitol ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #30137]	rhamnose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #30137]	urease	+	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #20814]	23272	-	-	-	-	-	+	-	+	+	+	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20814]	Sample type/isolated from	activated sludge of a pyrethroid manufactoring facility
[Ref.: #20814]	Geographic location (country and/or sea, region)	Jiangsu Prov., Yangzhou
[Ref.: #20814]	Country	China
[Ref.: #20814]	Country ISO 3 Code	CHN
[Ref.: #20814]	Continent	Asia
[Ref.: #20814]	Geographic location	32.4000°/119.4330°
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	-
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Industrial wastewater

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20814]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20814]	Sphingobium jiangsuense strain BA-3 16S ribosomal RNA gene, partial sequence	HM748834	1445	ENA	870476 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingobium jiangsuense DSM 26189	GCA_014196495	scaffold	GenBank	870476 tax ID	*
[Ref.: #66792]	Sphingobium jiangsuense strain DSM 26189	870476.3	wgs	PATRIC	870476 tax ID	*
[Ref.: #66792]	Sphingobium jiangsuense DSM 26189	2829898683	draft	JGI IMG/M	870476 tax ID	*

[Ref.: #30137]

GC-content

63.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobium jiangsuense DSM 26189 NCBI: GCA_014196495.1
[Ref.: #69480]	flagellated	no	87.554	yes
[Ref.: #69480]	gram-positive	no	95.753	no
[Ref.: #69480]	anaerobic	no	98.962	no
[Ref.: #69480]	aerobic	yes	95.488	yes
[Ref.: #69480]	halophile	no	94.093	no
[Ref.: #69480]	spore-forming	no	93.831	yes
[Ref.: #69480]	glucose-util	yes	73.315	no
[Ref.: #69480]	thermophile	no	97.453	yes
[Ref.: #69480]	motile	yes	58.587	yes
[Ref.: #69480]	glucose-ferment	no	91.721	yes

Availability in culture collections External links

[Ref.: #20814]

Culture collection no.

DSM 26189, CCTCC AB 201217, KACC 16433, KCTC 23196

[Ref.: #88411]

SI-ID 407790

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobium jiangsuense sp. nov., a 3-phenoxybenzoic acid-degrading bacterium isolated from a wastewater treatment system.	Zhang J, Lang ZF, Zheng JW, Hang BJ, Duan XQ, He J, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.029827-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20814

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26189

#30137

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26488 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88411

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407790.1 )

#26488

IJSEM 800 2012 ( DOI 10.1099/ijs.0.029827-0 , PubMed 21571933 )

* These data were automatically processed and therefore are not curated

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Sphingobium jiangsuense DSM 26189

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