Sphingobium jiangsuense (DSM 26189, CCTCC AB 201217, KACC 16433)

Name: Sphingobium jiangsuense (DSM 26189, CCTCC AB 201217, KACC 16433)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24556

Type strain

Strain Designation BA-3

Culture col. no. DSM 26189 CCTCC AB 201217 KACC 16433 KCTC 23196 BA-3

NCBI tax ID(s) 870476

Special Collections DSMZ KCTC Literature strains

Links

Sphingobium jiangsuense BA-3 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from activated sludge of a pyrethroid manufactoring facility.

Gram-negative aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407790

KCTC 23196,DSM 26189

@ref 20215

Last LPSN update 2025-12-16 09:52:52

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingobium

Species Sphingobium jiangsuense

Full scientific name Sphingobium jiangsuense Zhang et al. 2012

Synonyms (1)

Alterisphingobium jiangsuense

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Confidence
30137	negative	1-1.2 µm	0.6-0.8 µm
125439	negative			99.3
125438	negative			94.133

Pigmentation

30137

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20814	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20814	positive	growth	28	mesophilic
30137	positive	growth	10-37
30137	positive	optimum	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30137	positive	optimum	7
30137	positive	growth	5.5-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30137	aerobe
125438	aerobe	91.069
125439	aerobe	97

Spore formation

@ref	Spore formation	Confidence
30137
125439		96.1
125438		91.215

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30137	NaCl	positive	growth	0-2 %
30137	NaCl	positive	optimum	0.50 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
30137	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
30137	17234 ChEBI	glucose	+	carbon source
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
30137	29864 ChEBI	mannitol	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
30137	26546 ChEBI	rhamnose	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
30137	urease	+	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
20814	-	-	-	-	-	+	-	+	+	+	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	-
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Industrial wastewater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
20814	activated sludge of a pyrethroid manufactoring facility	Jiangsu Prov., Yangzhou	China	CHN	Asia	32.4	119.433 32.4/119.433

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20814	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1419649v1 assembly for Sphingobium jiangsuense DSM 26189	scaffold	GCA_014196495	870476.3	2829898683	870476	60.27

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20814	Sphingobium jiangsuense strain BA-3 16S ribosomal RNA gene, partial sequence	HM748834	1445		870476

GC content

30137

GC-content (mol%)63.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphingobium jiangsuense DSM 26189
NCBI: GCA_014196495

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.10	no
125439	motility	BacteriaNetⓘ	yes	65.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingobium jiangsuense DSM 26189
NCBI: GCA_014196495.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.13	yes
125438	anaerobic	anaerobicⓘ	no	93.93	yes
125438	aerobic	aerobicⓘ	yes	91.07	yes
125438	spore-forming	spore-formingⓘ	no	91.22	no
125438	thermophilic	thermophileⓘ	no	97.36	yes
125438	flagellated	motile2+ⓘ	yes	63.54	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genomic-based taxonomic classification of the order Sphingomonadales.	Wang Y, You H, Kong YH, Sun C, Wu LH, Kim SG, Lee JS, Xu L, Xu XW.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006769	2025
Phylogeny	Sphingobium jiangsuense sp. nov., a 3-phenoxybenzoic acid-degrading bacterium isolated from a wastewater treatment system.	Zhang J, Lang ZF, Zheng JW, Hang BJ, Duan XQ, He J, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.029827-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20814	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26189
#26488	IJSEM 800 2012 ( DOI 10.1099/ijs.0.029827-0 , PubMed 21571933 )
#30137	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26488
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingobium jiangsuense (DSM 26189, CCTCC AB 201217, KACC 16433)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014196495

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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