Rheinheimera baltica OSBAC1 | Type strain | DSM 14885, KCTC 12114, LMG 21511, CIP 107787 | BacDiveID:2454

Strain identifier

BacDive ID: 2454

Type strain:

Species: Rheinheimera baltica

Strain Designation: OSBAC1

Culture col. no.: DSM 14885, KCTC 12114, LMG 21511, CIP 107787

Strain history: CIP <- 2002, I. Brettar, GBF, Braunschweig, Germany: strain OSBAC1

NCBI tax ID(s): 1123053 (strain), 67576 (species)

SI-ID 86619

LMG 21511, DSM 14885, KCTC 12114, CIP 107787

Other strains from Rheinheimera baltica

R. baltica OSBAC5, DSM 14891

Section

Rheinheimera baltica OSBAC1 is a mesophilic, motile bacterium that was isolated from water sample, 5 m depth.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Rheinheimera*
	Species	**Rheinheimera baltica**
	Full Scientific Name (LPSN)	Rheinheimera baltica Brettar et al. 2002

Synonym

"Curacaobacter baltica"

Information on morphological and physiological properties Morphology

[Ref.: #116722]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.916

[Ref.: #116722]	Cell shape	rod-shaped

[Ref.: #116722]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.363

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

Marine agar (MA)

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #116722]

Culture medium

CIP Medium 13

[Ref.: #116722]

Culture medium growth

[Ref.: #116722]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #5599]			growth	25-28 °C
[Ref.: #40622]			growth	20 °C
[Ref.: #116722]			growth	10-30 °C
[Ref.: #116722]		no	growth	5 °C
[Ref.: #116722]		no	growth	37 °C
[Ref.: #116722]		no	growth	41 °C

[Ref.: #5599]	Temperature range	mesophilic
[Ref.: #40622]	Temperature range	psychrophilic
[Ref.: #116722]	Temperature range	psychrophilic
[Ref.: #116722]	Temperature range	mesophilic
[Ref.: #116722]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.967

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #116722]		NaCl		growth	2	%
[Ref.: #116722]		NaCl	no	growth	0	%
[Ref.: #116722]		NaCl	no	growth	4	%
[Ref.: #116722]		NaCl	no	growth	6	%
[Ref.: #116722]		NaCl	no	growth	8	%
[Ref.: #116722]		NaCl	no	growth	10	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]		amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116722]		citrate ChEBI	-	carbon source
[Ref.: #68371]		D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116722]		esculin ChEBI	+	hydrolysis
[Ref.: #68371]		esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116722]		nitrate ChEBI	-	reduction
[Ref.: #116722]		nitrate ChEBI	-	respiration
[Ref.: #116722]		nitrite ChEBI	-	reduction
[Ref.: #68371]		Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]		xylitol ChEBI	-	builds acid from	* from API 50CH acid
		Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116722]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #116722]		indole ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116722]		alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]		alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]		alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116722]		amylase	+
[Ref.: #116722]		beta-galactosidase	-	3.2.1.23
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]		beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116722]		caseinase	+	3.4.21.50
[Ref.: #116722]		catalase	+	1.11.1.6
[Ref.: #68382]		cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116722]		DNase	+
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #116722]		gelatinase	+
[Ref.: #116722]		lecithinase	+
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116722]		lipase	-
[Ref.: #68382]		lipase (C 14)	-		* from API zym
[Ref.: #116722]		lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116722]		ornithine decarboxylase	-	4.1.1.17
[Ref.: #116722]		oxidase	+
[Ref.: #116722]		protease	+
[Ref.: #68382]		trypsin	+	3.4.21.4	* from API zym
[Ref.: #116722]		tryptophan deaminase	-
[Ref.: #116722]		tween esterase	+
[Ref.: #116722]		urease	-	3.5.1.5
[Ref.: #68382]		valine arylamidase	-		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #116722]	11111	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116722]	10647	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5599]	Sample type/isolated from	water sample, 5 m depth
[Ref.: #5599]	Geographic location (country and/or sea, region)	Central Baltic Sea (international area

[Ref.: #116722]	Sample type/isolated from	Environment, Water sample
[Ref.: #116722]	Country	Baltic Sea
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5599]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116722]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5599]	Rheinheimera baltica strain DSM _14885 type 16S ribosomal RNA gene, partial sequence	MW145002	1520	ENA	67576 tax ID
[Ref.: #5599]	Rheinheimera baltica partial 16S rRNA gene, strain OSBAC1	AJ441080	1481	ENA	67576 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rheinheimera baltica DSM 14885	GCA_000425345	scaffold	GenBank	1123053 tax ID	*
[Ref.: #66792]	Rheinheimera baltica DSM 14885	1123053.3	wgs	PATRIC	1123053 tax ID	*
[Ref.: #66792]	Rheinheimera baltica DSM 14885	2523533585	draft	JGI IMG/M	1123053 tax ID	*

GC-content

47.8-48.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rheinheimera baltica DSM 14885 DSM 14885 NCBI: GCA_000425345.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rheinheimera baltica DSM 14885 DSM 14885 NCBI: GCA_000425345.1
[Ref.: #69480]	motile	yes	89.075	no
[Ref.: #69480]	flagellated	yes	79.363	no
[Ref.: #69480]	gram-positive	no	99.004	no
[Ref.: #69480]	anaerobic	no	93.814	no
[Ref.: #69480]	aerobic	yes	84.389	no
[Ref.: #69480]	halophile	no	88.186	no
[Ref.: #69480]	spore-forming	no	94.694	no
[Ref.: #69480]	thermophile	no	99.576	yes
[Ref.: #69480]	glucose-util	yes	87.891	no
[Ref.: #69480]	glucose-ferment	no	80.916	no

Availability in culture collections External links

Culture collection no.

DSM 14885, KCTC 12114, LMG 21511, CIP 107787

SI-ID 86619

*

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rheinheimera maricola sp. nov., isolated from seawater of the Yellow Sea.	Kim KH, Baek JH, Wenting R, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.005423	2022	*
Phylogeny	Rheinheimera gaetbuli sp. nov., a Marine Bacterium Isolated from a Tidal Flat.	Baek K, Jeon CO	Curr Microbiol	10.1007/s00284-015-0956-x	2015	*
Phylogeny	Rheinheimera aestuari sp. nov., a marine bacterium isolated from coastal sediment.	Baek K, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.000312	2015	*
Phylogeny	Rheinheimera japonica sp. nov., a novel bacterium with antimicrobial activity from seashore sediments of the Sea of Japan.	Romanenko LA, Tanaka N, Svetashev VI, Kalinovskaya NI, Mikhailov VV	Arch Microbiol	10.1007/s00203-015-1095-2	2015	*
Phylogeny	Rheinheimera pacifica sp. nov., a novel halotolerant bacterium isolated from deep sea water of the Pacific.	Romanenko LA, Uchino M, Falsen E, Zhukova NV, Mikhailov VV, Uchimura T	Int J Syst Evol Microbiol	10.1099/ijs.0.02252-0	2003	*
Phylogeny	Rheinheimera baltica gen. nov., sp. nov., a blue-coloured bacterium isolated from the central Baltic Sea.	Brettar I, Christen R, Hofle MG	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1851	2002	*

References

#5599

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14885

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40622 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71998

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID86619.1 )

#116722 Collection of Institut Pasteur ; Curators of the CIP; CIP 107787
* These data were automatically processed and therefore are not curated

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