Name: Rickettsia monacensis IrR/Munich
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24535

Type strain:

Species: Rickettsia monacensis

Strain Designation: IrR/Munich

Culture col. no.: DSM 29017, IrR Munich

Strain history: <- T. Kurtti, Univ. Minnesota; IrR/Munich <- U.G. Munderloh

NCBI tax ID(s): 109232 (species)

SI-ID 404272

DSM 29017

Section

Rickettsia monacensis IrR/Munich is a mesophilic, Gram-negative bacterium that was isolated from midgut and malpighian tubules from Ixodes ricinus tick .

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rickettsiales*
	Family	*Rickettsiaceae*
	Genus	*Rickettsia*
	Species	**Rickettsia monacensis**
	Full Scientific Name (LPSN)	Rickettsia monacensis Simser et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.898

[Ref.: #21096]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21096]

Culture medium

MEDIUM FOR TICK CELLS (RICKETTSIA) (DSMZ Medium 1555)

[Ref.: #21096]

Culture medium growth

[Ref.: #21096]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21096]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21096]			growth	30 °C

[Ref.: #21096]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21096]	Sample type/isolated from	midgut and malpighian tubules from Ixodes ricinus tick (female)
[Ref.: #21096]	Host species	Ixodes ricinus
[Ref.: #21096]	Geographic location (country and/or sea, region)	Munich, English Garden
[Ref.: #21096]	Country	Germany
[Ref.: #21096]	Country ISO 3 Code	DEU
[Ref.: #21096]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Tick
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21096]	Rickettsia sp. IrR/Munich outer membrane protein A (ompA) gene, partial cds	AF201329	488	ENA	109232 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rickettsia monacensis IrR/Munich	GCA_000499665	complete	GenBank	109232 tax ID	*
[Ref.: #66792]	Rickettsia monacensis IrR/Munich	1269334.5	wgs	PATRIC	1269334 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rickettsia monacensis IrR/Munich NCBI: GCA_000499665.2
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rickettsia monacensis IrR/Munich NCBI: GCA_000499665.1
[Ref.: #69480]	motile	no	89.981	no
[Ref.: #69480]	flagellated	no	98.335	no
[Ref.: #69480]	gram-positive	no	98.337	no
[Ref.: #69480]	anaerobic	no	95.445	no
[Ref.: #69480]	aerobic	no	88.412	no
[Ref.: #69480]	halophile	no	73.926	no
[Ref.: #69480]	spore-forming	no	96.924	no
[Ref.: #69480]	thermophile	no	93.61	yes
[Ref.: #69480]	glucose-util	no	57.336	no
[Ref.: #69480]	glucose-ferment	no	76.28	no
[Ref.: #69480]	motile	no	89.981	no
[Ref.: #69480]	flagellated	no	98.335	no
[Ref.: #69480]	gram-positive	no	98.337	no
[Ref.: #69480]	anaerobic	no	95.445	no
[Ref.: #69480]	halophile	no	73.926	no
[Ref.: #69480]	spore-forming	no	96.924	no
[Ref.: #69480]	thermophile	no	93.61	yes
[Ref.: #69480]	glucose-util	no	57.336	no
[Ref.: #69480]	aerobic	no	88.412	no
[Ref.: #69480]	glucose-ferment	no	76.28	no

Availability in culture collections External links

[Ref.: #21096]

Culture collection no.

DSM 29017, IrR Munich

[Ref.: #88390]

SI-ID 404272

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Examination of Rickettsial Host Range for Shuttle Vectors Based on dnaA and parA Genes from the pRM Plasmid of Rickettsia monacensis.	Burkhardt NY, Price LD, Wang XR, Heu CC, Baldridge GD, Munderloh UG, Kurtti TJ	Appl Environ Microbiol	10.1128/aem.00210-22	2022	*
Metabolism	GTP cyclohydrolase I activity from Rickettsia monacensis strain Humboldt, a rickettsial endosymbiont of Ixodes pacificus.	Bodnar J, Fitch S, Sanchez J, Lesser M, Baston DS, Zhong J	Ticks Tick Borne Dis	10.1016/j.ttbdis.2020.101434	2020	*
Genetics	Genome Sequence of "Candidatus Rickettsia colombianensi," a Novel Tick-Associated Bacterium Distributed in Colombia.	Miranda J, Mattar S, Puerta-Gonzalez A, Muskus C, Oteo JA	Microbiol Resour Announc	10.1128/MRA.01433-18	2019	*
Phylogeny	First isolation of Rickettsia monacensis from a patient in South Korea.	Kim YS, Choi YJ, Lee KM, Ahn KJ, Kim HC, Klein T, Jiang J, Richards A, Park KH, Jang WJ	Microbiol Immunol	10.1111/1348-0421.12496	2017	*
Phylogeny	Rickettsia monacensis sp. nov., a spotted fever group Rickettsia, from ticks (Ixodes ricinus) collected in a European city park.	Simser JA, Palmer AT, Fingerle V, Wilske B, Kurtti TJ, Munderloh UG	Appl Environ Microbiol	10.1128/AEM.68.9.4559-4566.2002	2002	*
Phylogeny	Isolation and characterization of a Rickettsia from the ovary of a Western black-legged tick, Ixodes pacificus.	Alowaysi M, Chen J, Stark S, Teague K, LaCourse M, Proctor J, Vigil K, Corrigan J, Harding A, Li J, Kurtti T, Zhong J	Ticks Tick Borne Dis	10.1016/j.ttbdis.2019.04.017	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21096

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29017

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88390

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404272.1 )

* These data were automatically processed and therefore are not curated

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