Name: Marichromatium indicum JA100
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2451

Type strain:

Species: Marichromatium indicum

Strain Designation: JA100

Culture col. no.: DSM 15907, ATCC BAA-741, JCM 12653

Strain history: <- K. Sasikala, J.N.T. Univ., Inst. Sci. Technol., Hyderabad, India; JA100 <- K. Arunasri , C. Sasikala, J.N.T. Univ. Hyderabad, Inst. Sci. Technol. and C. V. Ramana, Univ. Hyderabad, School Life Sci., India

NCBI tax ID(s): 224438 (species)

SI-ID 138012

ATCC BAA-741, DSM 15907, JCM 12653

Section

Marichromatium indicum JA100 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from mangrove soil.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Marichromatium*
	Species	**Marichromatium indicum**
	Full Scientific Name (LPSN)	Marichromatium indicum Arunasri et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #30058]	Gram stain	negative

[Ref.: #30058]	Cell length	4.5 µm

[Ref.: #30058]	Cell width	0.9 µm

[Ref.: #30058]	Cell shape	rod-shaped

[Ref.: #30058]	Motility	yes

[Ref.: #30058]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30058]			growth	25-39 °C
[Ref.: #30058]			optimum	32.5 °C

[Ref.: #30058]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30058]			optimum	6.75
[Ref.: #30058]			growth	6-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30058]

Oxygen tolerance

anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30058]		NaCl		growth	0.05-13	%
[Ref.: #30058]		NaCl		optimum	2.5	%

[Ref.: #30058]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30058]	acetate ChEBI	+	carbon source
[Ref.: #30058]	fructose ChEBI	+	carbon source
[Ref.: #30058]	lactate ChEBI	+	carbon source
[Ref.: #30058]	malate ChEBI	+	carbon source
[Ref.: #30058]	propionate ChEBI	+	carbon source
[Ref.: #30058]	pyruvate ChEBI	+	carbon source
[Ref.: #30058]	urea ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6177]	Sample type/isolated from	mangrove soil
[Ref.: #6177]	Geographic location (country and/or sea, region)	West Coast, Near Goa
[Ref.: #6177]	Country	India
[Ref.: #6177]	Country ISO 3 Code	IND
[Ref.: #6177]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ543328 (>99% sequence identity) for Marichromatium indicum from Microbeatlas

Aquatic Samples	77
Soil Samples	2
Animal Samples	1
Plant Samples	1
Total Samples	81

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6177]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6177]	Marichromatium indicum 16S rRNA gene, type strain JA100	AJ543328	1435	ENA	224438 tax ID

[Ref.: #30058]

GC-content

67.1 mol%

Availability in culture collections External links

[Ref.: #6177]

Culture collection no.

DSM 15907, ATCC BAA-741, JCM 12653

[Ref.: #71995]

SI-ID 138012

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marichromatium bheemlicum sp. nov., a non-diazotrophic, photosynthetic gammaproteobacterium from a marine aquaculture pond.	Kumar PA, Jyothsna TSS, Srinivas TNR, Sasikala C, Ramana CV, Imhoff JF	Int J Syst Evol Microbiol	10.1099/ijs.0.64753-0	2007	*
Phylogeny	Marichromatium indicum sp. nov., a novel purple sulfur gammaproteobacterium from mangrove soil of Goa, India.	Arunasri K, Sasikala C, Ramana CV, Suling J, Imhoff JF	Int J Syst Evol Microbiol	10.1099/ijs.0.02892-0	2005	*

References

#6177

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15907

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30058

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26419 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71995

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138012.1 )

#26419

IJSEM 673 2005 ( DOI 10.1099/ijs.0.02892-0 , PubMed 15774642 )

* These data were automatically processed and therefore are not curated

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