Name: Aliiroseovarius halocynthiae MA1-10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24498

Type strain:

Species: Aliiroseovarius halocynthiae

Strain Designation: MA1-10

Culture col. no.: DSM 27840, CCUG 60745, KCTC 23462

Strain history: <- KCTC

NCBI tax ID(s): 985055 (species)

SI-ID 397538

DSM 27840, CCUG 60745

Section

Aliiroseovarius halocynthiae MA1-10 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea squirt Halocynthia roretzi.

Gram-negative
motile
ovoid-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Aliiroseovarius*
	Species	**Aliiroseovarius halocynthiae**
	Full Scientific Name (LPSN)	Aliiroseovarius halocynthiae (Kim et al. 2012) Park et al. 2015

	Synonym	Pseudoroseovarius halocynthiae
	Synonym	Roseovarius halocynthiae

Information on morphological and physiological properties Morphology

[Ref.: #30249]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #30249]	Cell length	0.9-6.5 µm

[Ref.: #30249]	Cell width	0.4-0.7 µm

[Ref.: #30249]	Cell shape	ovoid-shaped

[Ref.: #30249]	Motility	yes

[Ref.: #20780]	Incubation period	2-3 days

[Ref.: #62427]	Incubation period	2 days

[Ref.: #30249]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20780]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #20780]

Culture medium growth

[Ref.: #20780]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20780]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20780]	growth	30 °C
[Ref.: #30249]	growth	10-37 °C
[Ref.: #30249]	optimum	30 °C
[Ref.: #62427]	growth	30 °C

[Ref.: #20780]	Temperature range	mesophilic
[Ref.: #30249]	Temperature range	mesophilic
[Ref.: #62427]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30249]			optimum	07-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30249]	Oxygen tolerance	aerobe
[Ref.: #62427]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30249]		NaCl		growth	0-6	%
[Ref.: #30249]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30249]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #30249]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #30249]	acid phosphatase	+	3.1.3.2
[Ref.: #30249]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #20780]	catalase	+	1.11.1.6
[Ref.: #30249]	catalase	+	1.11.1.6
[Ref.: #30249]	cytochrome oxidase	+	1.9.3.1
[Ref.: #20780]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #20780]	23978	-	-	-	-	-	-	-	+	-	-	-	+/-	-	-	-	-	-	-	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20780]	Sample type/isolated from	sea squirt Halocynthia roretzi
[Ref.: #20780]	Host species	Halocynthia roretzi
[Ref.: #20780]	Geographic location (country and/or sea, region)	Namhae
[Ref.: #20780]	Country	Republic of Korea
[Ref.: #20780]	Country ISO 3 Code	KOR
[Ref.: #20780]	Continent	Asia

[Ref.: #62427]	Sample type/isolated from	Sea squirt (Halocynthia roretzi)
[Ref.: #62427]	Sampling date	2009
[Ref.: #62427]	Geographic location (country and/or sea, region)	South Sea
[Ref.: #62427]	Country	Republic of Korea
[Ref.: #62427]	Country ISO 3 Code	KOR
[Ref.: #62427]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Tunicata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ852039 (>99% sequence identity) for Aliiroseovarius halocynthiae from Microbeatlas

Aquatic Samples	1414
Soil Samples	1
Animal Samples	40
Plant Samples	4
Total Samples	1459

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20780]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20780]	Roseovarius halocynthiae strain MA1-10 16S ribosomal RNA gene, partial sequence	HQ852039	1388	ENA	985055 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aliiroseovarius halocynthiae MA1-10	GCA_007004645	scaffold	GenBank	985055 tax ID	*
[Ref.: #66792]	Aliiroseovarius halocynthiae DSM 27840	2617270828	draft	JGI IMG/M	985055 tax ID	*

[Ref.: #20780]	GC-content	55.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30249]	GC-content	55.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aliiroseovarius halocynthiae MA1-10 NCBI: GCA_007004645.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aliiroseovarius halocynthiae MA1-10 NCBI: GCA_007004645.1
[Ref.: #69480]	flagellated	no	76.658	no
[Ref.: #69480]	gram-positive	no	97.532	yes
[Ref.: #69480]	anaerobic	no	98.39	yes
[Ref.: #69480]	aerobic	yes	85.856	yes
[Ref.: #69480]	halophile	yes	52.998	no
[Ref.: #69480]	spore-forming	no	96.885	no
[Ref.: #69480]	thermophile	no	89.503	yes
[Ref.: #69480]	glucose-util	no	50	yes
[Ref.: #69480]	motile	no	60.484	no
[Ref.: #69480]	glucose-ferment	no	90.059	yes

Availability in culture collections External links

[Ref.: #20780]

Culture collection no.

DSM 27840, CCUG 60745, KCTC 23462

[Ref.: #88356]

SI-ID 397538

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliiroseovarius marinus sp. nov., isolated from seawater.	Wang Y, Zhang Y, Guo C, Liu T, Dai Y, Lin M, Cui C, Zhang Y, Zhou C, Zhu W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003757	2020	*
Phylogeny	Pseudoroseovarius zhejiangensis gen. nov., sp. nov., a novel alpha-proteobacterium isolated from the chemical wastewater, and reclassification of Roseovarius crassostreae as Pseudoroseovarius crassostreae comb. nov., Roseovarius sediminilitoris as Pseudoroseovarius sediminilitoris comb. nov. and Roseovarius halocynthiae as Pseudoroseovarius halocynthiae comb. nov.	Sun C, Pan J, Zhang XQ, Su Y, Wu M	Antonie Van Leeuwenhoek	10.1007/s10482-015-0480-9	2015	*
Phylogeny	Aliiroseovarius pelagivivens gen. nov., sp. nov., isolated from seawater, and reclassification of three species of the genus Roseovarius as Aliiroseovarius crassostreae comb. nov., Aliiroseovarius halocynthiae comb. nov. and Aliiroseovarius sediminilitoris comb. nov.	Park S, Park JM, Kang CH, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.000315	2015	*
Phylogeny	Roseovarius sediminilitoris sp. nov., isolated from seashore sediment.	Park S, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.043737-0	2012	*
Phylogeny	Roseovarius halocynthiae sp. nov., isolated from the sea squirt Halocynthia roretzi.	Kim YO, Kong HJ, Park S, Kang SJ, Kim WJ, Kim KK, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.031674-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20780

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27840

#30249

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26591 (see below)

#62427 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60745

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88356

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397538.1 )

#26591

IJSEM 931 2012 ( DOI 10.1099/ijs.0.031674-0 , PubMed 21669917 )

* These data were automatically processed and therefore are not curated

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