Phaeobacter gallaeciensis (DSM 26640, BS 107, CIP 105210)

Name: Phaeobacter gallaeciensis (DSM 26640, BS 107, CIP 105210)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24493

Type strain

Strain Designation BS 107

Culture col. no. DSM 26640 BS 107 CIP 105210 IAM 14812 NBRC 16654 3 more

NCBI tax ID(s) 1423144 60890

Special Collections DSMZ JCM CIP

Links

Phaeobacter gallaeciensis BS 107 is a mesophilic, Gram-negative, motile prokaryote that was isolated from seawater from larval cultures of scallop, Pecten maximus.

Gram-negative motile rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 44134

ATCC 700781,CIP 105210,IAM 14812,NCIMB 13546,LMG 19757,DSM 12440,IFO 16654,NBRC 16654,LMG 23163,DSM 17395,JCM 21319,LMG 24391,CECT 7277,DSM 26640

@ref 20215

Last LPSN update 2025-12-16 09:52:51

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Phaeobacter

Species Phaeobacter gallaeciensis

Full scientific name Phaeobacter gallaeciensis (Ruiz-Ponte et al. 1998) Martens et al. 2006

Synonyms (1)

Roseobacter gallaeciensis

BacDive ID	Other strains from **Phaeobacter gallaeciensis** (2)	Type strain
158004	P. gallaeciensis P11, 02/017, DSM 29966
158005	P. gallaeciensis P12, 04/149, DSM 29967

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438	negative		98
125439	negative		97.3
119508	negative	rod-shaped

Colony morphology

20729

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
20729	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
41627	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
119508	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20729	positive	growth	25	mesophilic
41627	positive	growth	22	psychrophilic
67770	positive	growth	25	mesophilic
119508	positive	growth	5-30
119508	negative	growth	37
119508	negative	growth	41
119508	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.4

Spore formation

@ref	Spore formation	Confidence
125438		90.278
125439		97

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
119508	606565 ChEBI	hippurate	-	hydrolysis
119508	17632 ChEBI	nitrate	-	builds gas from
119508	17632 ChEBI	nitrate	+	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
119508	16301 ChEBI	nitrite	-	builds gas from
119508	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
119508	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
119508	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119508	amylase	+
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
119508	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119508	caseinase	-	3.4.21.50
20729	catalase	+	1.11.1.6
119508	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
20729	cytochrome-c oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119508	gamma-glutamyltransferase	+	2.3.2.2
119508	gelatinase	+/-
68369	gelatinase	-		from API 20NE
119508	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119508	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119508	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
119508	tryptophan deaminase	-
119508	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	adipate degradation	100	2 of 2
66794	resorcinol degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CMP-KDO biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	octane oxidation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	gluconeogenesis	100	8 of 8
66794	ppGpp biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	biotin biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	cyanate degradation	100	3 of 3
66794	photosynthesis	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
66794	threonine metabolism	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	vitamin B1 metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	vitamin B12 metabolism	82.35	28 of 34
66794	proline metabolism	81.82	9 of 11
66794	tryptophan metabolism	81.58	31 of 38
66794	purine metabolism	80.85	76 of 94
66794	methionine metabolism	80.77	21 of 26
66794	phenol degradation	80	16 of 20
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycine betaine biosynthesis	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	heme metabolism	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	citric acid cycle	78.57	11 of 14
66794	tyrosine metabolism	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	pyrimidine metabolism	77.78	35 of 45
66794	alanine metabolism	75.86	22 of 29
66794	carnitine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	vitamin B6 metabolism	72.73	8 of 11
66794	glutathione metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	arginine metabolism	70.83	17 of 24
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	lipid metabolism	67.74	21 of 31
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	4-hydroxymandelate degradation	66.67	6 of 9
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	histidine metabolism	65.52	19 of 29
66794	glycolysis	64.71	11 of 17
66794	lysine metabolism	64.29	27 of 42
66794	pentose phosphate pathway	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	cysteine metabolism	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	oxidative phosphorylation	60.44	55 of 91
66794	gallate degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	sulfate reduction	53.85	7 of 13
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	quinate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	ketogluconate metabolism	50	4 of 8
66794	arachidonic acid metabolism	50	9 of 18
66794	degradation of sugar alcohols	50	8 of 16
66794	androgen and estrogen metabolism	50	8 of 16
66794	ethanol fermentation	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	phenylmercury acetate degradation	50	1 of 2
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	metabolism of disaccharids	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	arachidonate biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	ascorbate metabolism	36.36	8 of 22
66794	d-xylose degradation	36.36	4 of 11
66794	degradation of pentoses	35.71	10 of 28
66794	sulfoquinovose degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	mevalonate metabolism	28.57	2 of 7
66794	degradation of sugar acids	28	7 of 25
66794	chlorophyll metabolism	27.78	5 of 18
66794	glycogen biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	daunorubicin biosynthesis	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119508	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
20729	-	-	-	-	-	-	-	+	-	-	-	+/-	+/-	+/-	-	-	-	+/-	-	-	not determinedn.d.
20729	-	-	-	-	-	-	-	+/-	+	+	+	+	+	+	+	-	+	+	+	+/-	not determinedn.d.

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119508	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
20729	seawater from larval cultures of scallop, Pecten maximus		Galicia	Spain	ESP	Europe
67770	Seawater from larval cultures of the scallop, Pecten maximus	Pecten maximus	Instituto Oceanografico, A Coruña	Spain	ESP	Europe
119508	Animal, Scallop Pecten maximus, larva		Galicia	Spain	ESP	Europe	1994

Taxonmaps

69479

Global distribution of 16S sequence Y13244 (>99% sequence identity) for Phaeobacter from Microbeatlas

Aquatic Samples	6774
Soil Samples	318
Animal Samples	295
Plant Samples	82
Total Samples	7469

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20729	1	Risk group (German classification)
119508	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM51138v1 assembly for Phaeobacter gallaeciensis DSM 26640	complete	GCA_000511385	1423144.3	2558309061	1423144	95.9
67770	ASM81962v1 assembly for Phaeobacter gallaeciensis DSM 26640	contig	GCA_000819625	1423144.14	2545555837	1423144	68.42

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20729	Phaeobacter gallaeciensis strain CIP 105210 16S ribosomal RNA gene, partial sequence	KC176239	1380		1423144
67770	Roseobacter gallaeciensis 16S rRNA gene	Y13244	1382		1423144

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Phaeobacter gallaeciensis DSM 26640
NCBI: GCA_000511385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	yes	75.80	no
125439	gram_stain	BacteriaNetⓘ	negative	97.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Phaeobacter gallaeciensis DSM 26640 DSM 26640
NCBI: GCA_000511385.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	95.54	no
125438	aerobic	aerobicⓘ	yes	84.40	no
125438	spore-forming	spore-formingⓘ	no	90.28	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	72.62	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Modular Low-Copy-Number Plasmid Vectors for Rhodobacterales with Extended Host Range in Alphaproteobacteria.	Korner D, Schafer NM, Lagares A, Birmes L, Oehlmann NN, Addison H, Pohl S, Thanbichler M, Rebelein JG, Petersen J, Becker A.	ACS Synth Biol	10.1021/acssynbio.4c00062	2024
	Draft Genome Sequence of Nereida sp. Strain MMG025, Isolated from Giant Kelp.	Alker AT, Hern NA, Ali MA, Baez MI, Baswell BC, Baxter BI, Blitz A, Calimlim TM, Chevalier CA, Eguia CA, Esparza T, Fuller AE, Gwynn CJ, Hedin AL, Johnson RA, Kaur M, Laxina RT, Lee K, Maguire PN, Martelino IF, Melendez JA, Navarro JJ, Navarro JN, Osborn JM, Padilla MR, Peralta ND, Pureza JLR, Rojas JJ, Romo TR, Sakha M, Salcedo GJ, Sims KA, Trieu TH, Niesman IR, Shikuma NJ.	Microbiol Resour Announc	10.1128/mra.00122-22	2022
Genetics	Bacterial Community Assembly, Succession, and Metabolic Function during Outdoor Cultivation of Microchloropsis salina.	Morris MM, Kimbrel JA, Geng H, Tran-Gyamfi MB, Yu ET, Sale KL, Lane TW, Mayali X.	mSphere	10.1128/msphere.00231-22	2022
	Bacterial controlled mitigation of dysbiosis in a seaweed disease.	Li J, Majzoub ME, Marzinelli EM, Dai Z, Thomas T, Egan S.	ISME J	10.1038/s41396-021-01070-1	2022
Metabolism	Nitrogen-Containing Volatiles from Marine Salinispora pacifica and Roseobacter-Group Bacteria.	Harig T, Schlawis C, Ziesche L, Pohlner M, Engelen B, Schulz S.	J Nat Prod	10.1021/acs.jnatprod.7b00789	2017
	Fluid dynamics and cell-bound Psl polysaccharide allows microplastic capture, aggregation and subsequent sedimentation by Pseudomonas aeruginosa in water.	Romero M, Carabelli A, R Swift M, I Smith M.	Environ Microbiol	10.1111/1462-2920.15916	2022
	Genome-Wide Discovery of Putative sRNAs in Paracoccus denitrificans Expressed under Nitrous Oxide Emitting Conditions.	Gaimster H, Chalklen L, Alston M, Munnoch JT, Richardson DJ, Gates AJ, Rowley G.	Front Microbiol	10.3389/fmicb.2016.01806	2016
	Origin and evolution of a novel DnaA-like plasmid replication type in Rhodobacterales.	Petersen J, Brinkmann H, Berger M, Brinkhoff T, Pauker O, Pradella S.	Mol Biol Evol	10.1093/molbev/msq310	2011
	Quorum sensing regulates 'swim-or-stick' lifestyle in the phycosphere.	Fei C, Ochsenkuhn MA, Shibl AA, Isaac A, Wang C, Amin SA.	Environ Microbiol	10.1111/1462-2920.15228	2020
	Vitamin B₁₂ is not shared by all marine prototrophic bacteria with their environment.	Sultana S, Bruns S, Wilkes H, Simon M, Wienhausen G.	ISME J	10.1038/s41396-023-01391-3	2023
Metabolism	The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis.	Seyedsayamdost MR, Case RJ, Kolter R, Clardy J.	Nat Chem	10.1038/nchem.1002	2011
	Thermodynamic matchers for the construction of the cuckoo RNA family.	Reinkensmeier J, Giegerich R.	RNA Biol	10.1080/15476286.2015.1017206	2015
	A small volume bioassay to assess bacterial/phytoplankton co-culture using WATER-Pulse-Amplitude-Modulated (WATER-PAM) fluorometry.	Bramucci AR, Labeeuw L, Mayers TJ, Saby JA, Case RJ.	J Vis Exp	10.3791/52455	2015
Metabolism	Conserved small mRNA with an unique, extended Shine-Dalgarno sequence.	Hahn J, Thalmann S, Migur A, von Boeselager RF, Kubatova N, Kubareva E, Schwalbe H, Evguenieva-Hackenberg E.	RNA Biol	10.1080/15476286.2016.1256534	2017
Metabolism	Roseobacticides: small molecule modulators of an algal-bacterial symbiosis.	Seyedsayamdost MR, Carr G, Kolter R, Clardy J.	J Am Chem Soc	10.1021/ja207172s	2011
	Assessing the exoproteome of marine bacteria, lesson from a RTX-toxin abundantly secreted by Phaeobacter strain DSM 17395.	Durighello E, Christie-Oleza JA, Armengaud J.	PLoS One	10.1371/journal.pone.0089691	2014
Metabolism	Comparative genomics and mutagenesis analyses of choline metabolism in the marine Roseobacter clade.	Lidbury I, Kimberley G, Scanlan DJ, Murrell JC, Chen Y.	Environ Microbiol	10.1111/1462-2920.12943	2015
Metabolism	A solo luxI-type gene directs acylhomoserine lactone synthesis and contributes to motility control in the marine sponge symbiont Ruegeria sp. KLH11.	Zan J, Choi O, Meharena H, Uhlson CL, Churchill MEA, Hill RT, Fuqua C.	Microbiology (Reading)	10.1099/mic.0.083956-0	2015
	A Bacterial Pathogen Displaying Temperature-Enhanced Virulence of the Microalga Emiliania huxleyi.	Mayers TJ, Bramucci AR, Yakimovich KM, Case RJ.	Front Microbiol	10.3389/fmicb.2016.00892	2016
Genetics	Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes.	Collins AJ, Fullmer MS, Gogarten JP, Nyholm SV.	Front Microbiol	10.3389/fmicb.2015.00123	2015
Metabolism	The Ruegeria pomeroyi acuI gene has a role in DMSP catabolism and resembles yhdH of E. coli and other bacteria in conferring resistance to acrylate.	Todd JD, Curson AR, Sullivan MJ, Kirkwood M, Johnston AW.	PLoS One	10.1371/journal.pone.0035947	2012
Genetics	High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.	Christie-Oleza JA, Miotello G, Armengaud J.	BMC Genomics	10.1186/1471-2164-13-73	2012
Metabolism	Expression of tropodithietic acid biosynthesis is controlled by a novel autoinducer.	Geng H, Belas R.	J Bacteriol	10.1128/jb.00410-10	2010
	A novel inducer of Roseobacter motility is also a disruptor of algal symbiosis.	Sule P, Belas R.	J Bacteriol	10.1128/jb.01777-12	2013
Metabolism	Discovery Strategies of Bioactive Compounds Synthesized by Nonribosomal Peptide Synthetases and Type-I Polyketide Synthases Derived from Marine Microbiomes.	Amoutzias GD, Chaliotis A, Mossialos D.	Mar Drugs	10.3390/md14040080	2016
Metabolism	Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification.	Haft DH, Payne SH, Selengut JD.	J Bacteriol	10.1128/jb.06026-11	2012
	Evaluation of the Production of Dissolved Organic Matter by Three Marine Bacterial Strains.	Goto S, Tada Y, Suzuki K, Yamashita Y.	Front Microbiol	10.3389/fmicb.2020.584419	2020
Genetics	Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210(T) (= DSM 26640(T) = BS107(T)).	Frank O, Pradella S, Rohde M, Scheuner C, Klenk HP, Goker M, Petersen J	Stand Genomic Sci	10.4056/sigs.5179110	2014
Phylogeny	Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395.	Buddruhs N, Pradella S, Goker M, Pauker O, Pukall R, Sproer C, Schumann P, Petersen J, Brinkhoff T	Int J Syst Evol Microbiol	10.1099/ijs.0.053900-0	2013
	Adaptation of Surface-Associated Bacteria to the Open Ocean: A Genomically Distinct Subpopulation of Phaeobacter gallaeciensis Colonizes Pacific Mesozooplankton.	Freese HM, Methner A, Overmann J	Front Microbiol	10.3389/fmicb.2017.01659	2017
Phylogeny	Tritonibacter horizontis gen. nov., sp. nov., a member of the Rhodobacteraceae, isolated from the Deepwater Horizon oil spill.	Klotz F, Brinkhoff T, Freese HM, Wietz M, Teske A, Simon M, Giebel HA.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002573	2018
Phylogeny	Phaeobacter marinintestinus sp. nov., isolated from the intestine of a sea cucumber (Apostichopus japonicus).	Lee MH, Song EJ, Seo MJ, Hyun DW, Bae JW, Lee SY, Roh SW, Nam YD.	Antonie Van Leeuwenhoek	10.1007/s10482-014-0318-x	2015
Phylogeny	Polyphasic taxonomic analysis of Parasedimentitalea marina gen. nov., sp. nov., a psychrotolerant bacterium isolated from deep sea water of the New Britain Trench.	Ding W, Liu P, Xu Y, Fang J, Cao J	FEMS Microbiol Lett	10.1093/femsle/fnaa004	2019
Phylogeny	Phaeobacter porticola sp. nov., an antibiotic-producing bacterium isolated from a sea harbour.	Breider S, Freese HM, Sproer C, Simon M, Overmann J, Brinkhoff T	Int J Syst Evol Microbiol	10.1099/ijsem.0.001879	2017
Phylogeny	Cribrihabitans neustonicus sp. nov., isolated from coastal surface seawater, and emended description of the genus Cribrihabitans Chen et al. 2014.	Hameed A, Shahina M, Lin SY, Lai WA, Liu YC, Hsu YH, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.066142-0	2014
Phylogeny	Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera.	Martens T, Heidorn T, Pukall R, Simon M, Tindall BJ, Brinkhoff T	Int J Syst Evol Microbiol	10.1099/ijs.0.63724-0	2006
Phylogeny	Paraphaeobacter pallidus gen. nov., sp. nov., isolated from seawater.	Cai X, Wang Y, Yang X, Liu J, Wu Y, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001935	2017
Phylogeny	Seohaeicola nanhaiensis sp. nov., a moderately halophilic bacterium isolated from the benthic sediment of South China Sea.	Xie BS, Lv XL, Cai M, Tang YQ, Wang YN, Cui HL, Liu XY, Tan Y, Wu XL	Curr Microbiol	10.1007/s00284-014-0658-9	2014
Phylogeny	Roseobacter gallaeciensis sp. nov., a new marine bacterium isolated from rearings and collectors of the scallop Pecten maximus.	Ruiz-Ponte C, Cilia V, Lambert C, Nicolas JL	Int J Syst Bacteriol	10.1099/00207713-48-2-537	1998

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20729	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26640
#41627	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119508	Collection of Institut Pasteur ; Curators of the CIP; CIP 105210
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Phaeobacter gallaeciensis (DSM 26640, BS 107, CIP 105210)

Name and taxonomic classification

Morphology

Cell morphology

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Culture and growth conditions

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Physiology and metabolism

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Metabolite utilization

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Genome browser: GCA_000511385

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