Yoonia maricola (DSM 29128, JCM 14564, KCTC 12863)

Name: Yoonia maricola (DSM 29128, JCM 14564, KCTC 12863)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24490

Type strain

Strain Designation DSW-18

Culture col. no. DSM 29128 JCM 14564 KCTC 12863 DSW-18 CIP 109730

NCBI tax ID(s) 420999

Special Collections DSMZ JCM KCTC CIP Literature strains

History <- JCM <- J. H. Yoon, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea; DSW-18 Y.-H. Yoon DSW-18. <- JH Yoon, KRIBB CIP <- 2007, JCM <- 2006, Y.H. Yoon, KRIBB, Taejon, Korea: strain DSW-18

Links

Yoonia maricola DSW-18 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309463

JCM 14564,KCTC 12863,CIP 109730,DSM 29128

@ref 20215

Last LPSN update 2026-02-09 11:23:59

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Yoonia

Species Yoonia maricola

Full scientific name Yoonia maricola (Yoon et al. 2007) Wirth and Whitman 2018

Synonyms (1)

Loktanella maricola

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32157	negative	1.9 µm	0.5 µm	rod-shaped
67771	negative
125438	negative				98.333
125439	negative				96
120791	negative			rod-shaped

Colony morphology

20630

Incubation period2-3 days

Pigmentation

32157

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
20630	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37383	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120791	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
20630	positive	growth	25
32157	positive	growth	04-34
32157	positive	optimum	25
37383	positive	growth	25
67770	positive	growth	25
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH
32157	positive	optimum	7.5
32157	positive	growth	>5.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	96.9

Spore formation

@ref	Spore formation	Confidence
125439		97.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32157	NaCl	positive	growth	01-07 %
32157	NaCl	positive	optimum	2 %

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32157	30089 ChEBI	acetate	+	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
32157	17057 ChEBI	cellobiose	+	carbon source
32157	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
32157	28757 ChEBI	fructose	+	carbon source
32157	28260 ChEBI	galactose	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
32157	17234 ChEBI	glucose	+	carbon source
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
32157	25115 ChEBI	malate	+	carbon source
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
120791	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
120791	16301 ChEBI	nitrite	-	reduction
32157	15361 ChEBI	pyruvate	+	carbon source
32157	30031 ChEBI	succinate	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
32157	53424 ChEBI	tween 20	+	carbon source
32157	53423 ChEBI	tween 40	+	carbon source
32157	53425 ChEBI	tween 60	+	carbon source
32157	53426 ChEBI	tween 80	+	carbon source
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
120791	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
32157	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
32157	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
20630	catalase	+	1.11.1.6
32157	catalase	+	1.11.1.6
120791	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
32157	cytochrome oxidase	+	1.9.3.1
20630	cytochrome-c oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
120791	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
120791	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120791	-	+	+	+	-	+	-	-	-	-	+	-	-	-	-	-	+	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
20630	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.
20630	-	-	-	-	-	+/-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20630	seawater	East Sea	Republic of Korea	KOR	Asia
67770	Seawater
67771	From seawater	East Sea	Republic of Korea	KOR	Asia
120791	Environment, Seawater	From seawater off Dokdo in the East Sea	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF202613 (>99% sequence identity) for Yoonia maricola from Microbeatlas

Aquatic Samples	215
Soil Samples	4
Animal Samples	17
Plant Samples
Total Samples	236

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20630	1	Risk group (German classification)
120791	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM279791v1 assembly for Yoonia maricola DSM 29128	contig	GCA_002797915	420999.3	2695420968	420999	77.43

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20630	Loktanella maricola strain DSW-18 16S ribosomal RNA gene, partial sequence	EF202613	1419		420999

GC content

@ref	GC-content (mol%)	Method
32157	56.8
67770	56.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Yoonia maricola DSM 29128
NCBI: GCA_002797915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.30	no
125439	motility	BacteriaNetⓘ	yes	62.40	no
125439	gram_stain	BacteriaNetⓘ	negative	96.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Loktanella maricola strain DSM 29128
PATRIC: 420999.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.33	no
125438	anaerobic	anaerobicⓘ	no	91.27	yes
125438	spore-forming	spore-formingⓘ	no	84.81	no
125438	aerobic	aerobicⓘ	yes	84.34	no
125438	thermophilic	thermophileⓘ	no	96.95	yes
125438	flagellated	motile2+ⓘ	yes	61.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Loktanella maritima sp. nov. isolated from shallow marine sediments.	Tanaka N, Romanenko LA, Kurilenko VV, Svetashev VI, Kalinovskaya NI, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.061747-0	2014
Phylogeny	Loktanella sediminilitoris sp. nov., isolated from tidal flat sediment.	Park S, Jung YT, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.049841-0	2013
Phylogeny	Loktanella tamlensis sp. nov., isolated from seawater.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.029462-0	2011
Phylogeny	Loktanella maricola sp. nov., isolated from seawater of the East Sea in Korea.	Yoon JH, Kang SJ, Lee SY, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65050-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20630	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29128
#28400	IJSEM 1799 2007 ( DOI 10.1099/ijs.0.65050-0 , PubMed 17684260 )
#32157	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28400
#37383	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120791	Collection of Institut Pasteur ; Curators of the CIP; CIP 109730
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Yoonia maricola (DSM 29128, JCM 14564, KCTC 12863)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002797915

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media