Name: Liberibacter crescens BT-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24487

Type strain:

Species: Liberibacter crescens

Strain Designation: BT-1

Culture col. no.: DSM 26877, ATCC BAA-2481

Strain history: <- J. Fagen, Univ. Florida; BT-1 <- M. J. Davis;

NCBI tax ID(s): 1273132 (species)

SI-ID 406447

DSM 26877

Section

Liberibacter crescens BT-1 is a mesophilic plant pathogen that was isolated from phloem sap of a defoliating Babaco papaya, Carica × heilbornii var. pentagona.

mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Liberibacter*
	Species	**Liberibacter crescens**
	Full Scientific Name (LPSN)	Liberibacter crescens Fagen et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #21200]

Incubation period

>14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21200]

Culture medium

BM7 (DSMZ Medium 1556)

[Ref.: #21200]

Culture medium growth

[Ref.: #21200]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21200]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21200]			growth	30 °C

[Ref.: #21200]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #21200]		catalase	-	1.11.1.6
[Ref.: #21200]		cytochrome-c oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21200]	Sample type/isolated from	phloem sap of a defoliating Babaco papaya, Carica × heilbornii var. pentagona
[Ref.: #21200]	Host species	Carica × heilbornii var. pentagona
[Ref.: #21200]	Geographic location (country and/or sea, region)	Puerto Rico, Lajas Experiment Station
[Ref.: #21200]	Country	USA
[Ref.: #21200]	Country ISO 3 Code	USA
[Ref.: #21200]	Continent	North America
[Ref.: #21200]	Geographic location	18.0500°/-67.0593°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body Product	#Plant	#Plant sap (Flux)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX430025 (>99% sequence identity) for Liberibacter crescens subclade from Microbeatlas

Aquatic Samples	653
Soil Samples	343
Animal Samples	134
Plant Samples	61
Total Samples	1191

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21200]	Pathogenicity (plant)	yes
[Ref.: #21200]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21200]	Liberibacter crescens strain BT-1 16S ribosomal RNA gene, partial sequence	JX430025	1385	ENA	1273132 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Liberibacter crescens BT-1	GCA_000325745	complete	GenBank	1215343 tax ID	*
[Ref.: #66792]	Liberibacter crescens BT-1	1215343.11	complete	PATRIC	1215343 tax ID	*
[Ref.: #66792]	Liberibacter crescens BT-1	2521172690	complete	JGI IMG/M	1215343 tax ID	*

[Ref.: #21200]

GC-content

35.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Liberibacter crescens BT-1 BT-1 NCBI: GCA_000325745.1
[Ref.: #69480]	motile	yes	64.73	no
[Ref.: #69480]	flagellated	no	87.659	no
[Ref.: #69480]	gram-positive	no	98.297	no
[Ref.: #69480]	anaerobic	no	97.016	no
[Ref.: #69480]	aerobic	no	86.491	no
[Ref.: #69480]	halophile	no	78.983	no
[Ref.: #69480]	spore-forming	no	97.067	no
[Ref.: #69480]	thermophile	no	65.046	yes
[Ref.: #69480]	glucose-util	no	50	no
[Ref.: #69480]	glucose-ferment	no	72.862	no

Availability in culture collections External links

[Ref.: #21200]

Culture collection no.

DSM 26877, ATCC BAA-2481

[Ref.: #88347]

SI-ID 406447

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Stress	Osmotic stress induces long-term biofilm survival in Liberibacter crescens.	Padgett-Pagliai KA, Pagliai FA, da Silva DR, Gardner CL, Lorca GL, Gonzalez CF	BMC Microbiol	10.1186/s12866-022-02453-w	2022	*
Metabolism	'Candidatus Liberibacter asiaticus'-Encoded BCP Peroxiredoxin Suppresses Lipopolysaccharide-Mediated Defense Signaling and Nitrosative Stress In Planta.	Jain M, Cai L, Black I, Azadi P, Carlson RW, Jones KM, Gabriel DW	Mol Plant Microbe Interact	10.1094/MPMI-09-21-0230-R	2022	*
Metabolism	Discovery of novel SecA inhibitors against "Candidatus Liberibacter asiaticus" through virtual screening and biological evaluation.	Zhang Z, Han Q, Mao X, Liu J, Wang W, Li D, Zhou F, Ke Y, Xu L, Hu L	Chem Biol Drug Des	10.1111/cbdd.13859	2021	*
Metabolism	Growth Dynamics and Survival of Liberibacter crescens BT-1, an Important Model Organism for the Citrus Huanglongbing Pathogen "Candidatus Liberibacter asiaticus".	Sena-Velez M, Holland SD, Aggarwal M, Cogan NG, Jain M, Gabriel DW, Jones KM	Appl Environ Microbiol	10.1128/AEM.01656-19	2019	*
Genetics	Liberibacter crescens Is a Cultured Surrogate for Functional Genomics of Uncultured Pathogenic 'Candidatus Liberibacter' spp. and Is Naturally Competent for Transformation.	Jain M, Cai L, Fleites LA, Munoz-Bodnar A, Davis MJ, Gabriel DW	Phytopathology	10.1094/PHYTO-04-19-0129-R	2019	*
Pathogenicity	"Candidatus Liberibacter asiaticus" prophage late genes may limit host range and culturability.	Fleites LA, Jain M, Zhang S, Gabriel DW	Appl Environ Microbiol	10.1128/AEM.01958-14	2014	*
Phylogeny	Liberibacter crescens gen. nov., sp. nov., the first cultured member of the genus Liberibacter.	Fagen JR, Leonard MT, Coyle JF, McCullough CM, Davis-Richardson AG, Davis MJ, Triplett EW	Int J Syst Evol Microbiol	10.1099/ijs.0.063255-0	2014	*
Genetics	Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter.	Fagen JR, Leonard MT, McCullough CM, Edirisinghe JN, Henry CS, Davis MJ, Triplett EW	PLoS One	10.1371/journal.pone.0084469	2014	*
Genetics	Complete genome sequence of Liberibacter crescens BT-1.	Leonard MT, Fagen JR, Davis-Richardson AG, Davis MJ, Triplett EW	Stand Genomic Sci	10.4056/sigs.3326772	2012	*
	Progress and Obstacles in Culturing 'Candidatus Liberibacter asiaticus', the Bacterium Associated with Huanglongbing.	Merfa MV, Perez-Lopez E, Naranjo E, Jain M, Gabriel DW, De La Fuente L	Phytopathology	10.1094/PHYTO-02-19-0051-RVW	2019	*
	Identification of the Genes Required for the Culture of Liberibacter crescens, the Closest Cultured Relative of the Liberibacter Plant Pathogens.	Lai KK, Davis-Richardson AG, Dias R, Triplett EW	Front Microbiol	10.3389/fmicb.2016.00547	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21200

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26877

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88347

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406447.1 )

* These data were automatically processed and therefore are not curated

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Liberibacter crescens BT-1 BT-1

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