Name: Rhizobium mesoamericanum 1847
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24485

Type strain:

Species: Rhizobium mesoamericanum

Strain Designation: 1847

Culture col. no.: DSM 28449, ATCC BAA-2123, CCGE 501, CIP 110148, HAMBI 3151

Strain history: <- CIP <- E. Martínez-Romero; CCGE 501

NCBI tax ID(s): 990284 (strain), 1079800 (species)

SI-ID 407922

DSM 28449

Section

Rhizobium mesoamericanum 1847 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from P. vulgaris root nodule obtained during a plant-trap experiment inoculated with a soil from the tropical rainforest.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium mesoamericanum**
	Full Scientific Name (LPSN)	Rhizobium mesoamericanum López-López et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30327]	Gram stain	negative

[Ref.: #30327]	Cell shape	rod-shaped

[Ref.: #30327]	Motility	yes

[Ref.: #21031]

Incubation period

1-2 days

[Ref.: #30327]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21031]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #21031]

Culture medium growth

[Ref.: #21031]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21031]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21031]	growth	30 °C
[Ref.: #30327]	growth	28-37 °C
[Ref.: #30327]	optimum	28 °C

[Ref.: #21031]	Temperature range	mesophilic
[Ref.: #30327]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30327]			optimum	7
[Ref.: #30327]			growth	4.5-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30327]

Oxygen tolerance

aerobe

[Ref.: #30327]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30327]		NaCl		growth	1.50	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30327]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30327]	aspartate ChEBI	+	carbon source
[Ref.: #30327]	cellobiose ChEBI	+	carbon source
[Ref.: #30327]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #30327]	fructose ChEBI	+	carbon source
[Ref.: #30327]	fucose ChEBI	+	carbon source
[Ref.: #30327]	galactose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30327]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30327]	glucose ChEBI	+	carbon source
[Ref.: #30327]	glutamate ChEBI	+	carbon source
[Ref.: #30327]	glycerol ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #30327]	lactate ChEBI	+	carbon source
[Ref.: #30327]	lactose ChEBI	+	carbon source
[Ref.: #30327]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #30327]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #30327]	mannitol ChEBI	+	carbon source
[Ref.: #30327]	mannose ChEBI	+	carbon source
[Ref.: #30327]	melibiose ChEBI	+	carbon source
[Ref.: #30327]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30327]	myo-inositol ChEBI	+	carbon source
[Ref.: #30327]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #30327]	proline ChEBI	+	carbon source
[Ref.: #30327]	rhamnose ChEBI	+	carbon source
[Ref.: #30327]	ribitol ChEBI	+	carbon source
[Ref.: #30327]	ribose ChEBI	+	carbon source
[Ref.: #30327]	serine ChEBI	+	carbon source
[Ref.: #30327]	sorbitol ChEBI	+	carbon source
[Ref.: #30327]	succinate ChEBI	+	carbon source
[Ref.: #30327]	sucrose ChEBI	+	carbon source
[Ref.: #30327]	trehalose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #30327]	uridine ChEBI	+	carbon source
[Ref.: #30327]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21031]	23998	-	-	-	-	+	+	-	+	+	+	+	+	+	+	-	-	-	+	+	+	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21031]	Sample type/isolated from	P. vulgaris root nodule obtained during a plant-trap experiment inoculated with a soil from the tropical rainforest
[Ref.: #21031]	Host species	Proteus vulgaris
[Ref.: #21031]	Geographic location (country and/or sea, region)	Veracruz, Los Tuxtlas
[Ref.: #21031]	Country	Mexico
[Ref.: #21031]	Country ISO 3 Code	MEX
[Ref.: #21031]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule
#Climate	#Hot	#Tropical

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF424606 (>99% sequence identity) for Rhizobium from Microbeatlas

Aquatic Samples	42
Soil Samples	464
Animal Samples	46
Plant Samples	378
Total Samples	930

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21031]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21031]	Rhizobium mesoamericanum CCGE 501 16S ribosomal RNA gene, partial sequence	JF424606	1350	ENA	990284 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium mesoamericanum DSM 28449	2928367626	draft	JGI IMG/M	1079800 tax ID	*
[Ref.: #66792]	Rhizobium mesoamericanum DSM 28449	2738541345	draft	JGI IMG/M	1079800 tax ID	*

[Ref.: #21031]

GC-content

58.98 mol%

Availability in culture collections External links

[Ref.: #21031]

Culture collection no.

DSM 28449, ATCC BAA-2123, CCGE 501, CIP 110148, HAMBI 3151

[Ref.: #88346]

SI-ID 407922

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizobium altiplani sp. nov., isolated from effective nodules on Mimosa pudica growing in untypically alkaline soil in central Brazil.	Barauna AC, Rouws LFM, Simoes-Araujo JL, Dos Reis Junior FB, Iannetta PPM, Maluk M, Goi SR, Reis VM, James EK, Zilli JE	Int J Syst Evol Microbiol	10.1099/ijsem.0.001322	2016	*
Phylogeny	Rhizobium metallidurans sp. nov., a symbiotic heavy metal resistant bacterium isolated from the Anthyllis vulneraria Zn-hyperaccumulator.	Grison CM, Jackson S, Merlot S, Dobson A, Grison C	Int J Syst Evol Microbiol	10.1099/ijs.0.000130	2015	*
Genetics	High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.	Klonowska A, Lopez-Lopez A, Moulin L, Ardley J, Gollagher M, Marinova D, Tian R, Huntemann M, Reddy TB, Varghese N, Woyke T, Markowitz V, Ivanova N, Seshadri R, Baeshen MN, Baeshen NA, Kyrpides N, Reeve W	Stand Genomic Sci	10.1186/s40793-016-0212-4	2017	*
Phylogeny	Rhizobium grahamii sp. nov., from nodules of Dalea leporina, Leucaena leucocephala and Clitoria ternatea, and Rhizobium mesoamericanum sp. nov., from nodules of Phaseolus vulgaris, siratro, cowpea and Mimosa pudica.	Lopez-Lopez A, Rogel-Hernandez MA, Barois I, Ortiz Ceballos AI, Martinez J, Ormeno-Orrillo E, Martinez-Romero E	Int J Syst Evol Microbiol	10.1099/ijs.0.033555-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21031

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28449

#30327

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26668 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88346

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407922.1 )

#26668

IJSEM 2264 2012 ( DOI 10.1099/ijs.0.033555-0 , PubMed 22081714 )

* These data were automatically processed and therefore are not curated

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