Actinophytocola sediminis (DSM 45939, BCRC 16956, YIM M13705)

Name: Actinophytocola sediminis (DSM 45939, BCRC 16956, YIM M13705)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24459

Type strain

Culture col. no. DSM 45939 BCRC 16956 YIM M13705 JCM 30581

NCBI tax ID(s) 1476870

Special Collections DSMZ JCM

History <- W.-J. Li, YIM; YIM M13705 <- D.-F. Zhang, Yunnan University,China BCRC 16956 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM M13705.

Links

Actinophytocola sediminis DSM 45939 is a bacterium that was isolated from marine sediment.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 399711

JCM 30581,DSM 45939

@ref 20215

Last LPSN update 2026-02-09 11:23:58

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Actinophytocola

Species Actinophytocola sediminis

Full scientific name Actinophytocola sediminis Zhang et al. 2014

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21209	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21209	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Observation

67770

Observationquinones: MK-9(H₄), MK-10(H₂)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
21209	marine sediment	South China Sea (112° 30.203' E 18° 1.654' N, at a depth of 2439 m)	China	CHN	Asia	18.0276	112.503 18.0276/112.503
67770	Marine sediment of the South China Sea

Taxonmaps

69479

Global distribution of 16S sequence KJ013500 (>99% sequence identity) for Actinophytocola sediminis subclade from Microbeatlas

Aquatic Samples
Soil Samples	14
Animal Samples
Plant Samples
Total Samples	14

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21209	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21209	Actinophytocola sediminis strain YIM M13705 16S ribosomal RNA gene, partial sequence	KJ013500	1528		1476870

GC content

@ref	GC-content (mol%)	Method
21209	68.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinophytocola xanthii sp. nov., an actinomycete isolated from rhizosphere soil of the plant Xanthium sibiricum.	Wang W, Wang B, Meng H, Xing Z, Lai Q, Yuan L	Int J Syst Evol Microbiol	10.1099/ijsem.0.001781	2017
Phylogeny	Actinophytocola sediminis sp. nov., an actinomycete isolated from a marine sediment.	Zhang DF, Jiang Z, Zhang XM, Yang LL, Tian XP, Long LJ, Zhang S, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.062638-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21209	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45939
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Actinophytocola sediminis (DSM 45939, BCRC 16956, YIM M13705)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media