Name: Pseudomonas chengduensis MBR
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24441

Type strain:

Species: Pseudomonas chengduensis

Strain Designation: MBR

Culture col. no.: DSM 26382, CGMCC 2318

Strain history: <- T. Yong, Key Laboratory of Environm. Appl. Microbiology, Chengdu Institute of Biology; MBR

NCBI tax ID(s): 489632 (species)

SI-ID 405883

DSM 26382

Section

Pseudomonas chengduensis MBR is a mesophilic bacterium that was isolated from landfill leachate in a solid-waste disposal site.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas chengduensis**
	Full Scientific Name (LPSN)	Pseudomonas chengduensis Tao et al. 2014

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #21144]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21144]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21144]			growth	28 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21144]	23404	+	-	-	-	-	-	-	-	+	-	-	+	-	-	+	+	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21144]	Sample type/isolated from	landfill leachate in a solid-waste disposal site
[Ref.: #21144]	Geographic location (country and/or sea, region)	Sichuan, Chengdu
[Ref.: #21144]	Country	China
[Ref.: #21144]	Country ISO 3 Code	CHN
[Ref.: #21144]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Landfill
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

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Global distribution of 16S sequence EU307111 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	2670
Soil Samples	769
Animal Samples	2451
Plant Samples	1575
Total Samples	7465

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21144]	Pseudomonas chengduensis strain MBR 16S ribosomal RNA gene, partial sequence	EU307111	1529	ENA	489632 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas chengduensis DSM 26382	GCA_012986985	contig	GenBank	489632 tax ID	*
[Ref.: #66792]	Pseudomonas chengduensis MBR	GCA_017905455	scaffold	GenBank	489632 tax ID	*
[Ref.: #66792]	Pseudomonas chengduensis DSM 26382	GCA_900102635	scaffold	GenBank	489632 tax ID	*
[Ref.: #66792]	Pseudomonas chengduensis strain DSM 26382	489632.23	wgs	PATRIC	489632 tax ID	*
[Ref.: #66792]	Pseudomonas chengduensis strain DSM 26382	489632.16	wgs	PATRIC	489632 tax ID	*
[Ref.: #66792]	Pseudomonas chengduensis DSM 26382	2663762777	draft	JGI IMG/M	489632 tax ID	*

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GC-content

61.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas chengduensis MBR NCBI: GCA_017905455.1
[Ref.: #69480]	motile	yes	88.221	no
[Ref.: #69480]	flagellated	yes	86.913	no
[Ref.: #69480]	gram-positive	no	98.708	no
[Ref.: #69480]	anaerobic	no	97.075	no
[Ref.: #69480]	aerobic	yes	91.507	no
[Ref.: #69480]	halophile	no	84.24	no
[Ref.: #69480]	spore-forming	no	96.15	no
[Ref.: #69480]	thermophile	no	99.824	no
[Ref.: #69480]	glucose-util	yes	90.559	no
[Ref.: #69480]	glucose-ferment	no	91.506	yes

Availability in culture collections External links

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Culture collection no.

DSM 26382, CGMCC 2318

[Ref.: #88319]

SI-ID 405883

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas lopnurensis sp. nov., an endophytic bacterium isolated from Populus euphratica at the ancient Ugan river.	Mamtimin T, Anwar N, Abdurahman M, Kurban M, Rozahon M, Mamtimin H, Hamood B, Rahman E, Wu M	Antonie Van Leeuwenhoek	10.1007/s10482-021-01524-8	2021	*
Phylogeny	Taxonomic description and draft genome of Pseudomonas sediminis sp. nov., isolated from the rhizospheric sediment of Phragmites karka.	Behera P, Mahapatra M, Seuylemezian A, Vaishampayan P, Ramana VV, Joseph N, Joshi A, Shouche Y, Suar M, Pattnaik AK, Rastogi G	J Microbiol	10.1007/s12275-018-7549-x	2018	*
Phylogeny	Pseudomonas chengduensis sp. nov., isolated from landfill leachate.	Tao Y, Zhou Y, He X, Hu X, Li D	Int J Syst Evol Microbiol	10.1099/ijs.0.050294-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21144

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26382

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88319

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405883.1 )

* These data were automatically processed and therefore are not curated

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