Pseudomonas sagittaria (DSM 27945, BCRC 80399, JCM 18195)

Name: Pseudomonas sagittaria (DSM 27945, BCRC 80399, JCM 18195)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24439

Type strain

Strain Designation CC-OPY-1

Culture col. no. DSM 27945 BCRC 80399 JCM 18195 CC-OPY-1

NCBI tax ID(s) 1135990

Special Collections DSMZ JCM Literature strains

Links

Pseudomonas sagittaria CC-OPY-1 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from oil-contaminated soil.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399979

JCM 18195,BCRC 80399,DSM 27945

@ref 20215

Last LPSN update 2025-12-16 09:52:51

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas sagittaria

Full scientific name Pseudomonas sagittaria Lin et al. 2013

Synonyms (1)

Geopseudomonas sagittaria

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30834	negative	1.75 µm	0.6 µm	rod-shaped
125438	negative				98.5
125439	negative				96.6
125439					90.3

Pigmentation

30834

Productionyes

Multimedia

@ref:	21142
multimedia content:	DSM_27945.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_27945.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
21142	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
21142	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
21142	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21142	positive	growth	28	mesophilic
30834	positive	growth	25-37	mesophilic
30834	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30834	positive	optimum	7
30834	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

30834

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99

Compound production

21142

Compoundsiderophore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30834	NaCl	positive	growth	0-5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
30834	22599 ChEBI	arabinose	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
30834	18403 ChEBI	L-arabitol	+	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
30834	17306 ChEBI	maltose	+	carbon source
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
30834	37684 ChEBI	mannose	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
30834	26546 ChEBI	rhamnose	+	carbon source
30834	15963 ChEBI	ribitol	+	carbon source
30834	17992 ChEBI	sucrose	+	carbon source
30834	27082 ChEBI	trehalose	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
30834	35581 ChEBI	indole
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
30834	35581 ChEBI	indole	+
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
30834	acid phosphatase	+	3.1.3.2
30834	alkaline phosphatase	+	3.1.3.1
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
30834	catalase	+	1.11.1.6
30834	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
21142	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+
21142	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21142	oil-contaminated soil	Kaohsiung City	Taiwan, Province of China	TWN	Asia
67770	Oil-contaminated soil	Taichung	Taiwan, Province of China	TWN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21142	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2663762798 annotated assembly for Geopseudomonas sagittaria JCM 18195	scaffold	GCA_900115715	1135990.3	2663762798	1135990	66.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21142	Pseudomonas sagittaria strain CC-OPY-1 16S ribosomal RNA gene, partial sequence	JQ277453	1535		1135990

GC content

30834

GC-content (mol%)68.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas sagittaria JCM 18195
NCBI: GCA_900115715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.00	no
125439	motility	BacteriaNetⓘ	yes	90.30	no
125439	gram_stain	BacteriaNetⓘ	negative	96.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative aerobe	66.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas sagittaria strain JCM 18195
PATRIC: 1135990.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	95.30	no
125438	spore-forming	spore-formingⓘ	no	86.24	no
125438	aerobic	aerobicⓘ	yes	82.99	no
125438	thermophilic	thermophileⓘ	no	96.43	no
125438	flagellated	motile2+ⓘ	yes	89.19	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Validation List no. 219. Valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006452	2024
Phylogeny	Phylogenomics studies and molecular markers reliably demarcate genus Pseudomonas sensu stricto and twelve other Pseudomonadaceae species clades representing novel and emended genera.	Rudra B, Gupta RS.	Front Microbiol	10.3389/fmicb.2023.1273665	2023
Phylogeny	Isolation of Pseudomonas aromaticivorans sp. nov from a hydrocarbon-contaminated groundwater capable of degrading benzene-, toluene-, m- and p-xylene under microaerobic conditions.	Banerjee S, Bedics A, Toth E, Kriszt B, Soares AR, Boka K, Tancsics A	Front Microbiol	10.3389/fmicb.2022.929128	2022
Phylogeny	Pseudomonas sagittaria sp. nov., a siderophore-producing bacterium isolated from oil-contaminated soil.	Lin SY, Hameed A, Liu YC, Hsu YH, Lai WA, Chen WM, Shen FT, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.045567-0	2012
Phylogeny	Pseudomonas oryzae sp. nov. isolated from a paddy soil in South China.	Yu Z, Chang M, Wu M, Yang G, Zhou S, Zhuang L	Arch Microbiol	10.1007/s00203-013-0930-6	2013
Phylogeny	Pseudomonas guangdongensis sp. nov., isolated from an electroactive biofilm, and emended description of the genus Pseudomonas Migula 1894.	Yang G, Han L, Wen J, Zhou S	Int J Syst Evol Microbiol	10.1099/ijs.0.054676-0	2013
Phylogeny	Pseudomonas oryzagri sp. nov., isolated from a rice field soil.	Huq MA, Lee SY, Ma J, Rahman MM, Rahman MS, Park JH, Akter S	Int J Syst Evol Microbiol	10.1099/ijsem.0.005534	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21142	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27945
#30834	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27164 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas sagittaria (DSM 27945, BCRC 80399, JCM 18195)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900115715

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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