Name: Isoptericola chiayiensis 06182M-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24345

Type strain:

Species: Isoptericola chiayiensis

Strain Designation: 06182M-1

Culture col. no.: DSM 27643, BCRC 16888, JCM 18063, KCTC 19740

Strain history: BCRC 16888 <-- M. Tseng 06182M-1.

NCBI tax ID(s): 579446 (species)

SI-ID 362747

LMG 25314, BCRC 16888, KCTC 19740, JCM 18063, DSM 27643

Special Collections

Section

Isoptericola chiayiensis 06182M-1 is a bacterium that was isolated from mangrove soil.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Isoptericola*
	Species	**Isoptericola chiayiensis**
	Full Scientific Name (LPSN)	Isoptericola chiayiensis Tseng et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.525

[Ref.: #69480]	Motility	no Confidence in %92.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20612]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #20612]

Culture medium growth

[Ref.: #20612]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20612]

Culture medium composition

expand / minimize

[Ref.: #20612]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #20612]

Culture medium growth

[Ref.: #20612]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #20612]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #20612]

Culture medium growth

[Ref.: #20612]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #20612]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20612]	Sample type/isolated from	mangrove soil
[Ref.: #20612]	Country	Taiwan, Province of China
[Ref.: #20612]	Country ISO 3 Code	TWN
[Ref.: #20612]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Mangrove soil from Chiayi County
[Ref.: #67770]	Country	Taiwan, Province of China
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ469988 (>99% sequence identity) for Isoptericola from Microbeatlas

Aquatic Samples	2
Soil Samples	29
Animal Samples	9
Plant Samples
Total Samples	40

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20612]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20612]	Isoptericola chiayiensis strain 06182M-1 16S ribosomal RNA gene, partial sequence	FJ469988	1518	GenBank ENA	579446 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Isoptericola chiayiensis KCTC 19740	GCA_013149805	scaffold	GenBank ENA	579446 tax ID	*
[Ref.: #66792]	Isoptericola chiayiensis strain KCTC 19740	579446.14	wgs	PATRIC	579446 tax ID	*
[Ref.: #66792]	Isoptericola chiayiensis KCTC 19740	2849274716	draft	JGI IMG/M	579446 tax ID	*

[Ref.: #20612]	GC-content	72.8 mol%
[Ref.: #67770]	GC-content	72.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Isoptericola chiayiensis KCTC 19740 NCBI: GCA_013149805.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	62	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Isoptericola chiayiensis KCTC 19740 NCBI: GCA_013149805.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.525	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.462	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.735	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	55.8	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.5	no

Availability in culture collections External links

[Ref.: #20612]

Culture collection no.

DSM 27643, BCRC 16888, JCM 18063, KCTC 19740

[Ref.: #88271]

SI-ID 362747

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isoptericola sediminis sp. nov., Isolated from Chilika Lagoon.	Kumar D, U J, A K, G S, Sasikala C, Ramana CV	Curr Microbiol	10.1007/s00284-020-02325-4	2021	*
Metabolism	Chemical Constituents from a Mangrove-Derived Actinobacteria Isoptericola chiayiensis BCRC 16888 and Evaluation of Their Anti-NO Activity.	Su YS, Cheng MJ, Wu MD, Chai CY, Kwan AL, Su SH, Kuo YH	Chem Biodivers	10.1002/cbdv.202100211	2021	*
Phylogeny	Isoptericola chiayiensis sp. nov., isolated from mangrove soil.	Tseng M, Liao HC, Chiang WP, Yuan GF	Int J Syst Evol Microbiol	10.1099/ijs.0.022491-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20612

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27643

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88271

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID362747.1 )

* These data were automatically processed and therefore are not curated

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Isoptericola chiayiensis KCTC 19740

Isoptericola chiayiensis KCTC 19740

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