Isoptericola chiayiensis (DSM 27643, BCRC 16888, JCM 18063)

Name: Isoptericola chiayiensis (DSM 27643, BCRC 16888, JCM 18063)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24345

Type strain

Strain Designation 06182M-1

Culture col. no. DSM 27643 BCRC 16888 JCM 18063 KCTC 19740 06182M-1

NCBI tax ID(s) 579446

Special Collections DSMZ JCM KCTC

History DSMZ <- KCTC; KCTC 19740 JCM <-- BCRC 16888 <-- M. Tseng 06182M-1.

Links

Isoptericola chiayiensis 06182M-1 is a bacterium that was isolated from mangrove soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 362747

LMG 25314,BCRC 16888,KCTC 19740,JCM 18063,DSM 27643

@ref 20215

Last LPSN update 2026-05-29 08:30:36

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Promicromonosporaceae

Genus Isoptericola

Species Isoptericola chiayiensis

Full scientific name Isoptericola chiayiensis Tseng et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.64
125438		92.5
125438	positive	91.525

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
20612	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
20612	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
20612	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20612	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.595

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₂)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
20612	mangrove soil	Taiwan, Province of China	TWN	Asia
67770	Mangrove soil from Chiayi County	Taiwan, Province of China	TWN	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ469988 (>99% sequence identity) for Isoptericola from Microbeatlas

Aquatic Samples	2
Soil Samples	29
Animal Samples	9
Plant Samples	0
Total Samples	40

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20612	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1314980v1 assembly for Isoptericola chiayiensis KCTC 19740	scaffold	GCA_013149805	579446.14	2849274716	579446	63.55
124043	ASM3954244v1 assembly for Isoptericola chiayiensis JCM 18063	scaffold	GCA_039542445			579446	37.15

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20612	Isoptericola chiayiensis strain 06182M-1 16S ribosomal RNA gene, partial sequence	FJ469988	1518		579446

GC content

@ref	GC-content (mol%)	Method
20612	72.8
67770	72.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1314980v1 assembly for Isoptericola chiayiensis KCTC 19740
NCBI: GCA_013149805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no
125439	motility	BacteriaNetⓘ	no	85.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.64	no
125439	spore_formation	BacteriaNetⓘ	yes	48.62	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Isoptericola chiayiensis KCTC 19740
NCBI: GCA_013149805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.53	no
125438	anaerobic	anaerobicⓘ	no	95.46	no
125438	aerobic	aerobicⓘ	yes	80.74	no
125438	spore-forming	spore-formingⓘ	no	55.80	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Recent Advances in Anti-Inflammatory Compounds from Marine Microorganisms.	Yang G, Lin M, Kaliaperumal K, Lu Y, Qi X, Jiang X, Xu X, Gao C, Liu Y, Luo X.	Mar Drugs	10.3390/md22090424	2024
Genetics	Actinomycetes as Producers of Biologically Active Terpenoids: Current Trends and Patents.	Tarasova EV, Luchnikova NA, Grishko VV, Ivshina IB.	Pharmaceuticals (Basel)	10.3390/ph16060872	2023
Metabolism	Light-inducible carotenoid production controlled by a MarR-type regulator in Corynebacterium glutamicum.	Sumi S, Suzuki Y, Matsuki T, Yamamoto T, Tsuruta Y, Mise K, Kawamura T, Ito Y, Shimada Y, Watanabe E, Watanabe S, Toriyabe M, Takano Shiratori H, Ueda K, Takano H.	Sci Rep	10.1038/s41598-019-49384-7	2019
Metabolism	Chemical Constituents from a Mangrove-Derived Actinobacteria Isoptericola chiayiensis BCRC 16888 and Evaluation of Their Anti-NO Activity.	Su YS, Cheng MJ, Wu MD, Chai CY, Kwan AL, Su SH, Kuo YH	Chem Biodivers	10.1002/cbdv.202100211	2021
	Isoptericola croceus sp. nov., a novel actinobacterium isolated from saline-alkali soil.	OuYang YT, Lv AP, Liu L, Li TT, Zhou Y, She TT, Cao LX, Jiao JY, Wang S, Li WJ.	Antonie Van Leeuwenhoek	10.1007/s10482-023-01849-6	2023
Phylogeny	Isoptericola sediminis sp. nov., Isolated from Chilika Lagoon.	Kumar D, U J, A K, G S, Sasikala C, Ramana CV	Curr Microbiol	10.1007/s00284-020-02325-4	2021
Phylogeny	Isoptericola chiayiensis sp. nov., isolated from mangrove soil.	Tseng M, Liao HC, Chiang WP, Yuan GF	Int J Syst Evol Microbiol	10.1099/ijs.0.022491-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20612	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27643
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Isoptericola chiayiensis (DSM 27643, BCRC 16888, JCM 18063)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013149805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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