Name: Prevotella melaninogenica CD3:34
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24340

Type strain:

Species: Prevotella melaninogenica

Strain Designation: CD3:34

Culture col. no.: DSM 26980, CCUG 60312

Strain history: <- M. Hedberg, Umea University, Institution of Clinical Microbiology, Div. of Immunology; CD3:34

NCBI tax ID(s): 28132 (species)

SI-ID 407894

DSM 26980

Other strains from Prevotella melaninogenica

P. melaninogenica B282, DSM 7089, ATCC 25845, JCM ... (type strain)
P. melaninogenica 10181, N58-71A, CIP 104591
P. melaninogenica CCUG 25835
P. melaninogenica CCUG 27732, ATCC 43982
P. melaninogenica CCUG 51439
P. melaninogenica CCUG 65141
P. melaninogenica JCM 6321, BCRC 17704, WAL 485
P. melaninogenica JCM 6324, NCTC 9338

Section

Prevotella melaninogenica CD3:34 is an anaerobe, mesophilic human pathogen that was isolated from biopsy from small intestine of child with coeliac disease.

anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Prevotellaceae*
	Genus	*Prevotella*
	Species	**Prevotella melaninogenica**
	Full Scientific Name (LPSN)	Prevotella melaninogenica (Oliver and Wherry 1921) Shah and Collins 1990

	Synonym	"Bacterium* melaninogenicum"*
	Synonym	Bacteroides melaninogenicus

Information on morphological and physiological properties Morphology

[Ref.: #20740]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20740]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #20740]

Culture medium growth

[Ref.: #20740]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20740]

Culture medium composition

expand / minimize

[Ref.: #20740]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #20740]

Culture medium growth

[Ref.: #20740]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20740]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20740]			growth	37 °C

[Ref.: #20740]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20740]

Oxygen tolerance

anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68367]	cellobiose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68367]	D-xylose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	esculin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #68367]	gelatin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #68367]	glycerol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68367]	L-rhamnose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	lactose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	maltose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	melezitose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68367]	raffinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68367]	salicin ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sucrose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	-	energy source	* from API 20A, API rID32A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A, API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68367]		indole ChEBI	no	* from API 20A, API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A, API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A, API 20A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68367]	gelatinase	-		* from API 20A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API 20A
	Only first 10 entries are displayed. Click here to see all.

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #20740]	2096	-	-	+	-	+	+	+	-	-	-	-	-	-	-	+	-	+	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #20740]	13237	-	-	+	+	+	+	-	-	-	+	-	-	-	+	-	-	+	+	-	+	-	+/-	-	-	+	-	+	+/-	-
[Ref.: #20740]	13228	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	+	-	+/-	-	-	-	+	+	-	-	+
[Ref.: #20740]	12458	-	+/-	-	+	-	+	-	-	-	+	-	-	-	+/-	-	-	+	+	-	+	-	-	-	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20740]	Sample type/isolated from	biopsy from small intestine of child with coeliac disease
[Ref.: #20740]	Geographic location (country and/or sea, region)	Umea
[Ref.: #20740]	Country	Sweden
[Ref.: #20740]	Country ISO 3 Code	SWE
[Ref.: #20740]	Continent	Europe
[Ref.: #20740]	Geographic location	63.8284°/20.2597°
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Biopsy
#Host	#Human	#Child
#Host Body-Site	#Gastrointestinal tract	#Small intestine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ778986 (>99% sequence identity) for Prevotella melaninogenica from Microbeatlas

Aquatic Samples	495
Soil Samples	254
Animal Samples	36074
Plant Samples	170
Total Samples	36993

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20740]	Pathogenicity (human)	yes
[Ref.: #20740]	Pathogenicity (animal)	yes
[Ref.: #20740]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20740]	Prevotella sp. CD3:34 16S ribosomal RNA gene, partial sequence	JQ778986	1484	ENA	1177577 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Prevotella melaninogenica strain FDAARGOS_1567	28132.362	complete	PATRIC	28132 tax ID	*
[Ref.: #66792]	Prevotella melaninogenica strain FDAARGOS_1567	28132.351	complete	PATRIC	28132 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prevotella melaninogenica strain FDAARGOS_1567 PATRIC: 28132.362
[Ref.: #69480]	motile	no	92.947	no
[Ref.: #69480]	gram-positive	no	97.419	no
[Ref.: #69480]	anaerobic	yes	97.888	no
[Ref.: #69480]	halophile	no	83.447	no
[Ref.: #69480]	spore-forming	no	95.442	no
[Ref.: #69480]	glucose-util	yes	89.069	no
[Ref.: #69480]	flagellated	no	96.984	no
[Ref.: #69480]	aerobic	no	98.185	yes
[Ref.: #69480]	thermophile	no	97.826	yes
[Ref.: #69480]	glucose-ferment	yes	56.859	no

Availability in culture collections External links

[Ref.: #20740]

Culture collection no.

DSM 26980, CCUG 60312

[Ref.: #88266]

SI-ID 407894

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20740

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26980

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68367

Automatically annotated from API 20A .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88266

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407894.1 )

* These data were automatically processed and therefore are not curated

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Prevotella melaninogenica strain FDAARGOS_1567

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