Name: Rhodopirellula baltica SWK14
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24316

Type strain:

Species: Rhodopirellula baltica

Strain Designation: SWK14

Culture col. no.: DSM 24080, JCM 17622

Strain history: J. Harder SWK14.

NCBI tax ID(s): 265606 (species)

SI-ID 400472

DSM 24080

Other strains from Rhodopirellula baltica

R. baltica SH 1, DSM 10527, NCIMB 13988, IFAM ... (type strain)
R. baltica SH28, DSM 24038, IFAM 1430, JCM ...
R. baltica WH47, DSM 24081, JCM 17624
R. baltica 3ILRT, DSM 25515
R. baltica 4ILRT, DSM 25516
R. baltica 5ILRT, DSM 25517
R. baltica 2ILRT, DSM 25548

Section

Rhodopirellula baltica SWK14 is a mesophilic bacterium that was isolated from algal surface.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Pirellulales*
	Family	*Pirellulaceae*
	Genus	*Rhodopirellula*
	Species	**Rhodopirellula baltica**
	Full Scientific Name (LPSN)	Rhodopirellula baltica Schlesner et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #20767]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20767]

Culture medium

M13a (PIRELLULA) MEDIUM (DSMZ Medium 600a)

[Ref.: #20767]

Culture medium growth

[Ref.: #20767]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20767]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20767]			growth	28 °C
[Ref.: #67770]			growth	26 °C

[Ref.: #20767]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20767]	Sample type/isolated from	algal surface
[Ref.: #20767]	Geographic location (country and/or sea, region)	Tjärnö
[Ref.: #20767]	Country	Sweden
[Ref.: #20767]	Country ISO 3 Code	SWE
[Ref.: #20767]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Algae surface in Tjärnö
[Ref.: #67770]	Country	Sweden
[Ref.: #67770]	Country ISO 3 Code	SWE
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Algae

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20767]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20767]	Rhodopirellula sp. SWK14 16S ribosomal RNA gene, complete sequence; and 16S-23S ribosomal RNA intergenic spacer, partial sequence	FJ624373	1637	ENA	595456 tax ID
[Ref.: #20767]	Rhodopirellula baltica SWK14, whole genome shotgun sequencing project	AMWG00000000	189	ENA	993516 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodopirellula baltica SWK14	GCA_000330745	contig	GenBank	993516 tax ID	*
[Ref.: #66792]	Rhodopirellula baltica SWK14	993516.3	wgs	PATRIC	993516 tax ID	*
[Ref.: #66792]	Rhodopirellula baltica SWK14	2563366763	draft	JGI IMG/M	993516 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodopirellula baltica SWK14 PATRIC: 993516.3
[Ref.: #69480]	motile	yes	82.929	no
[Ref.: #69480]	flagellated	no	79.436	no
[Ref.: #69480]	gram-positive	no	96.243	no
[Ref.: #69480]	anaerobic	no	98.256	no
[Ref.: #69480]	halophile	no	61.133	no
[Ref.: #69480]	spore-forming	no	90.541	no
[Ref.: #69480]	glucose-util	yes	89.326	no
[Ref.: #69480]	aerobic	yes	90.046	no
[Ref.: #69480]	thermophile	no	99.378	yes
[Ref.: #69480]	glucose-ferment	no	87.386	no

Availability in culture collections External links

[Ref.: #20767]

Culture collection no.

DSM 24080, JCM 17622

[Ref.: #88249]

SI-ID 400472

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Permanent draft genomes of the three Rhodopirellula baltica strains SH28, SWK14 and WH47.	Richter M, Richter-Heitmann T, Klindworth A, Wegner CE, Frank CS, Harder J, Glockner FO	Mar Genomics	10.1016/j.margen.2013.11.004	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20767

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24080

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88249

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400472.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rhodopirellula baltica in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF