Bisgaardia genomospecies 1 (DSM 28232, CCUG 59551, M1765/96/5)

Name: Bisgaardia genomospecies 1 (DSM 28232, CCUG 59551, M1765/96/5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24300

Type strain

Strain Designation M1765/96/5

Culture col. no. DSM 28232 CCUG 59551 M1765/96/5 NCTC 13474

NCBI tax ID(s) 880564

Special Collections DSMZ CCUG

Links

Bisgaardia genomospecies 1 M1765/96/5 is a microaerophile, mesophilic Proteobacterium that was isolated from grey seal, lung .

microaerophile mesophilic 16S sequence

Name and taxonomic classification

SI-ID 400173

DSM 28232,CCUG 59551

@ref 20928

Domain Bacteria

Phylum Proteobacteria

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Bisgaardia

Species Bisgaardia genomospecies 1

Full scientific name Bisgaardia genomospecies 1

Strain designation M1765/96/5

Type strain yes

Morphology

Colony morphology

@ref	Type of hemolysis	Incubation period
20928	gamma	1-2 days
62014		1 day

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20928	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20928	positive	growth	37	mesophilic
62014	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

62014

Oxygen tolerancemicroaerophile

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68381	16988 ChEBI	D-ribose	-	builds acid from	from API rID32STR
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68381	17716 ChEBI	lactose	-	builds acid from	from API rID32STR
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	-	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	-	builds acid from	from API rID32STR
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68381	15688 ChEBI	acetoin	-		from API rID32STR
68369	35581 ChEBI	indole		-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68381	Alanyl-Phenylalanyl-Proline arylamidase	-		from API rID32STR
68381	alkaline phosphatase	+	3.1.3.1	from API rID32STR
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68381	beta-glucosidase	-	3.2.1.21	from API rID32STR
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
20928	catalase	+	1.11.1.6
20928	cytochrome-c oxidase	+	1.9.3.1
68369	gelatinase	-		from API 20NE
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68381	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32STR
68381	urease	-	3.5.1.5	from API rID32STR
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
20928	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
20928	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	-
#Host Body-Site	#Oral cavity and airways	#Lung

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Host species
20928	grey seal, lung (Halichoerus grypus)				Europe	Halichoerus grypus
62014	Grey seal,lung (Halichoerus grypus)	Scotland	United Kingdom	GBR	Europe

Taxonmaps

69479

Global distribution of 16S sequence GU295088 (>99% sequence identity) for Bisgaardia hudsonensis subclade from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples	6
Plant Samples
Total Samples	7

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20928	Bisgaardia genomosp. 1 strain M1765/96/5 16S ribosomal RNA (rrs) gene, partial sequence	GU295088	1362		880564

Genome-based predictions

Literature

References

#20928	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28232
#62014	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59551
#68369	Automatically annotated from API 20NE .
#68381	Automatically annotated from API rID32STR .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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