Paenibacillus vulneris (DSM 27954, CCUG 53270, JCM 18268)

Name: Paenibacillus vulneris (DSM 27954, CCUG 53270, JCM 18268)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24286

Type strain

Culture col. no. DSM 27954 CCUG 53270 JCM 18268

NCBI tax ID(s) 1133364

Special Collections DSMZ CCUG JCM Literature strains

Links

Paenibacillus vulneris DSM 27954 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from necrotic wound of a 35-year-old man.

spore-forming Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 303305

LMG 31298,CCUG 53270,JCM 18268,DSM 27954

@ref 20215

Last LPSN update 2025-12-16 09:52:49

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus vulneris

Full scientific name Paenibacillus vulneris Glaeser et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Motility
30654	positive	2.5 µm	0.9 µm

Pigmentation

30654

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20710	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
20710	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20710	positive	growth	30	mesophilic
30654	positive	growth	15-50
30654	positive	optimum	30	mesophilic
59853	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30654	positive	optimum	7.5
30654	positive	growth	5.5-11.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30654	aerobe
59853	aerobe

Spore formation

30654

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30654	NaCl	positive	growth	0-2 %
30654	NaCl	positive	optimum	1 %

Observation

67770

Observationquinones: MK-7, MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
30654	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
30654	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	-	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	+	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
30654	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
30654	28260 ChEBI	galactose	+	carbon source
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
30654	24265 ChEBI	gluconate	+	carbon source
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
30654	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	+	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
30654	25115 ChEBI	malate	+	carbon source
30654	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
30654	29864 ChEBI	mannitol	+	carbon source
30654	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	+	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	+	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
30654	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
30654	15361 ChEBI	pyruvate	+	carbon source
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
30654	26546 ChEBI	rhamnose	+	carbon source
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
30654	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
30654	30911 ChEBI	sorbitol	+	carbon source
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
30654	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
30654	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
30654	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
30654	catalase	+	1.11.1.6
30654	cytochrome oxidase	+	1.9.3.1
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
30654	urease	+	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
59853	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
59853	-	+	-	-	+	+	+	-	-	+	+	+	+	-	-	-	-	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+	-	-	-	+	+	+	-	-	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Inflammation	-
#Infection	#Patient	-
#Host Body-Site	#Other	#Wound
#Host	#Human	#Male

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
20710	necrotic wound of a 35-year-old man		Tromsø	Norway	NOR	Europe
59853	Human necrotic wound,35-yr-old man,ankle fracture	2006-08-01	Tromsö	Norway	NOR	Europe
67770	Necrotic wound of a 35-year-old man in Tromsø			Norway	NOR	Europe

Taxonmaps

69479

Global distribution of 16S sequence HE649498 (>99% sequence identity) for Paenibacillus vulneris from Microbeatlas

Aquatic Samples	12
Soil Samples	82
Animal Samples	8
Plant Samples	5
Total Samples	107

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20710	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954318v1 assembly for Paenibacillus vulneris JCM 18268	scaffold	GCA_039543185	1133364	64.08
124043	ASM4266072v1 assembly for Paenibacillus vulneris JCM 18268	contig	GCA_042660725	1133364	63.91
124043	ASM4267914v1 assembly for Paenibacillus vulneris CCUG 53270	scaffold	GCA_042679145	1133364	63.68

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20710	Paenibacillus vulneris partial 16S rRNA gene, type strain CCUG 53270T	HE649498	1449		1133364

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Microbial occurrence and antibiotic resistance in ready-to-go food items.	Cole ML, Singh OV.	J Food Sci Technol	10.1007/s13197-018-3180-4	2018
Genetics	Genomic and Metabolic Characterization of a Potentially Novel Paenibacillus Species Isolated as a Laboratory Contaminant Growing on Medium Supporting Cotton Tissue Culture.	Topcu I, Parunandi SS, Gregory TA, Campbell LM, Rathore K, Antony-Babu S.	Microbiologyopen	10.1002/mbo3.70107	2025
Phylogeny	Paenibacillus vulneris sp. nov., isolated from a necrotic wound.	Glaeser SP, Falsen E, Busse HJ, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.041210-0	2012
Phylogeny	Paenibacillus piri sp. nov., isolated from urban soil.	Trinh NH, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003811	2020
Phylogeny	Paenibacillus esterisolvens sp. nov., isolated from soil.	Zhao ZL, Ming H, Ji WL, Khieu TN, Chu-Ky S, Cheng LJ, Meng XL, Li WJ, Nie GX	Int J Syst Evol Microbiol	10.1099/ijsem.0.002754	2018
Phylogeny	Paenibacillus limicola sp. nov., isolated from tidal flat sediment.	Nahar S, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002522	2017
Phylogeny	Paenibacillus periandrae sp. nov., isolated from nodules of Periandra mediterranea.	Menendez E, Ramirez-Bahena MH, Carro L, Fernandez-Pascual M, Peter Klenk H, Velazquez E, Mateos PF, Peix A, Rita Scotti M	Int J Syst Evol Microbiol	10.1099/ijsem.0.000953	2016
Phylogeny	Paenibacillus yunnanensis sp. nov., isolated from Pu'er tea.	Niu L, Tang T, Ma Z, Song L, Zhang K, Chen Y, Hua Z, Hu X, Zhao M	Int J Syst Evol Microbiol	10.1099/ijsem.0.000496	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20710	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27954
#30654	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26985 (see below)
#59853	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53270
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus vulneris (DSM 27954, CCUG 53270, JCM 18268)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039543185

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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