Name: Paenibacillus puldeungensis DSM 27603
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24283

Type strain:

Species: Paenibacillus puldeungensis

Culture col. no.: DSM 27603, CCUG 59189, KCTC 13718, CAU 9324, CIP 110606

Strain history: CIP <- 2013, CCUG <- 2010, K. Wonyong, CAU, Seoul, South Korea: strain CAU 9324

NCBI tax ID(s): 696536 (species)

SI-ID 403891

DSM 27603, CCUG 59189

Section

Paenibacillus puldeungensis DSM 27603 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from grassy sandbank.

Gram-positive
rod-shaped
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus puldeungensis**
	Full Scientific Name (LPSN)	Paenibacillus puldeungensis Traiwan et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29838]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #122043]	Gram stain	negative

[Ref.: #29838]	Cell length	1.05 µm

[Ref.: #29838]	Cell width	0.35 µm

[Ref.: #29838]	Cell shape	rod-shaped
[Ref.: #122043]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #29838]	Motility	no
[Ref.: #122043]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #61853]

Incubation period

2 days

[Ref.: #29838]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20707]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #20707]

Culture medium growth

[Ref.: #20707]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20707]

Culture medium composition

expand / minimize

[Ref.: #32820]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #32820]

Culture medium growth

[Ref.: #32820]

Culture medium composition

expand / minimize

[Ref.: #122043]

Culture medium

CIP Medium 29

[Ref.: #122043]

Culture medium growth

[Ref.: #122043]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #20707]	growth	30 °C
[Ref.: #29838]	growth	20-45 °C
[Ref.: #29838]	optimum	30 °C
[Ref.: #32820]	growth	37 °C
[Ref.: #61853]	growth	37 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #20707]	Temperature range	mesophilic
[Ref.: #29838]	Temperature range	mesophilic
[Ref.: #32820]	Temperature range	mesophilic
[Ref.: #61853]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29838]			optimum	6
[Ref.: #29838]			growth	05-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29838]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe

[Ref.: #67771]	Type of spore	spore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #29838]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29838]		NaCl		growth	0-15	%
[Ref.: #29838]		NaCl		optimum	3	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29838]	arabinose ChEBI	+	carbon source
[Ref.: #29838]	gluconate ChEBI	+	carbon source
[Ref.: #29838]	glucose ChEBI	+	carbon source
[Ref.: #29838]	glycerol ChEBI	+	carbon source
[Ref.: #29838]	lactose ChEBI	+	carbon source
[Ref.: #29838]	maltose ChEBI	+	carbon source
[Ref.: #29838]	melibiose ChEBI	+	carbon source
[Ref.: #29838]	nitrate ChEBI	+	reduction
[Ref.: #29838]	raffinose ChEBI	+	carbon source
[Ref.: #29838]	ribose ChEBI	+	carbon source
[Ref.: #29838]	salicin ChEBI	+	carbon source
[Ref.: #29838]	sucrose ChEBI	+	carbon source
[Ref.: #29838]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29838]		alpha-galactosidase	+	3.2.1.22
[Ref.: #29838]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20707]	Sample type/isolated from	grassy sandbank
[Ref.: #20707]	Geographic location (country and/or sea, region)	DaeYiJac Island
[Ref.: #20707]	Country	Republic of Korea
[Ref.: #20707]	Country ISO 3 Code	KOR
[Ref.: #20707]	Continent	Asia

[Ref.: #61853]	Sample type/isolated from	Grassy sandbank
[Ref.: #61853]	Sampling date	2009-04-19
[Ref.: #61853]	Geographic location (country and/or sea, region)	DaeYiJac Island
[Ref.: #61853]	Country	Republic of Korea
[Ref.: #61853]	Country ISO 3 Code	KOR
[Ref.: #61853]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From grassy sandbank
[Ref.: #67771]	Geographic location (country and/or sea, region)	DaeYiJac Islan
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #122043]	Sample type/isolated from	Grassy Sandbanc
[Ref.: #122043]	Geographic location (country and/or sea, region)	DaeYiJac Island
[Ref.: #122043]	Country	Republic of Korea
[Ref.: #122043]	Country ISO 3 Code	KOR
[Ref.: #122043]	Continent	Asia
[Ref.: #122043]	Isolation date	2009-04-19
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU187433 (>99% sequence identity) for Paenibacillus puldeungensis subclade from Microbeatlas

Aquatic Samples
Soil Samples	4
Animal Samples	2
Plant Samples
Total Samples	6

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20707]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122043]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20707]	Paenibacillus puldeungensis strain CAU 9324 16S ribosomal RNA gene, partial sequence	GU187433	1409	ENA	696536 tax ID

[Ref.: #20707]

GC-content

48.8 mol%

Availability in culture collections External links

[Ref.: #20707]

Culture collection no.

DSM 27603, CCUG 59189, KCTC 13718, CAU 9324, CIP 110606

[Ref.: #88221]

SI-ID 403891

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chengkuizengella sediminis gen. nov. sp. nov., isolated from sediment.	Cao WR, Guo LY, Du ZJ, Das A, Saren G, Jiang MY, Dunlap CA, Rooney AP, Yu XK, Li TG	Int J Syst Evol Microbiol	10.1099/ijsem.0.002006	2017	*
Phylogeny	Paenibacillus apis sp. nov. and Paenibacillus intestini sp. nov., isolated from the intestine of the honey bee Apis mellifera.	Yun JH, Lee JY, Kim PS, Jung MJ, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.001887	2017	*
Phylogeny	Paenibacillus medicaginis sp. nov. a chitinolytic endophyte isolated from a root nodule of alfalfa (Medicago sativa L.).	Lai WA, Hameed A, Lin SY, Hung MH, Hsu YH, Liu YC, Shahina M, Shen FT, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000505	2015	*
Phylogeny	Paenibacillus puldeungensis sp. nov., isolated from a grassy sandbank.	Traiwan J, Park MH, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.022202-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20707

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27603

#29838

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26214 (see below)

#32820 ; Curators of the CIP;
#61853 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59189
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88221

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403891.1 )

#122043 Collection of Institut Pasteur ; Curators of the CIP; CIP 110606

#26214

IJSEM 670 2011 ( DOI 10.1099/ijs.0.022202-0 , PubMed 20418417 )

* These data were automatically processed and therefore are not curated

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