Name: Cohnella rhizosphaerae CSE-5610
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24274

Type strain:

Species: Cohnella rhizosphaerae

Strain Designation: CSE-5610

Culture col. no.: DSM 28161, CIP 110695, LMG 28080

Strain history: CIP <- 2013, P. Kämpfer, Justus Liebig Giessen Univ., Giessen, Germany: strain CSE-5610

NCBI tax ID(s): 1457232 (species)

SI-ID 398424

DSM 28161, CIP 110695

Section

Cohnella rhizosphaerae CSE-5610 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from rhizosphere environment of sweet corn .

Gram-positive
rod-shaped
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Cohnella*
	Species	**Cohnella rhizosphaerae**
	Full Scientific Name (LPSN)	Cohnella rhizosphaerae Kämpfer et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #122207]	Gram stain	positive

[Ref.: #122207]	Cell shape	rod-shaped

[Ref.: #122207]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20511]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #20511]

Culture medium growth

[Ref.: #20511]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20511]

Culture medium composition

expand / minimize

[Ref.: #122207]

Culture medium

CIP Medium 72

[Ref.: #122207]

Culture medium growth

[Ref.: #122207]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #20511]			growth	30 °C

[Ref.: #20511]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122207]

Ability of spore formation

yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20511]	Sample type/isolated from	rhizosphere environment of sweet corn (Zea mays)
[Ref.: #20511]	Host species	Zea mays
[Ref.: #20511]	Geographic location (country and/or sea, region)	Tallassee, Alabama
[Ref.: #20511]	Country	USA
[Ref.: #20511]	Country ISO 3 Code	USA
[Ref.: #20511]	Continent	North America

[Ref.: #122207]	Sample type/isolated from	Plant, Field grown corn root tissue
[Ref.: #122207]	Geographic location (country and/or sea, region)	Alabama
[Ref.: #122207]	Country	United States of America
[Ref.: #122207]	Country ISO 3 Code	USA
[Ref.: #122207]	Continent	North America
[Ref.: #122207]	Isolation date	2005
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF840792 (>99% sequence identity) for Cohnella rhizosphaerae from Microbeatlas

Aquatic Samples	5
Soil Samples	190
Animal Samples	5
Plant Samples	1
Total Samples	201

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20511]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122207]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20511]	Cohnella rhizosphaerae strain CSE-5610 16S ribosomal RNA gene, partial sequence	KF840792	1464	ENA	1457232 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cohnella rhizosphaerae DSM 28161	GCA_029525575	contig	GenBank	1457232 tax ID	*

[Ref.: #20511]

GC-content

60.0 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cohnella rhizosphaerae DSM 28161 NCBI: GCA_029525575.1
[Ref.: #69480]	motile	yes	51.143	no
[Ref.: #69480]	flagellated	no	87.449	no
[Ref.: #69480]	gram-positive	yes	73.89	no
[Ref.: #69480]	anaerobic	no	88.53	no
[Ref.: #69480]	aerobic	yes	65.221	no
[Ref.: #69480]	halophile	no	82.816	no
[Ref.: #69480]	spore-forming	no	64.084	no
[Ref.: #69480]	glucose-ferment	no	58.035	no
[Ref.: #69480]	thermophile	no	94.404	yes
[Ref.: #69480]	glucose-util	yes	92.104	no

Availability in culture collections External links

[Ref.: #20511]

Culture collection no.

DSM 28161, CIP 110695, LMG 28080

[Ref.: #88215]

SI-ID 398424

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cohnella rhizosphaerae sp. nov., isolated from the rhizosphere environment of Zea mays.	Kampfer P, Glaeser SP, McInroy JA, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.060814-0	2014	*
Phylogeny	Cohnella algarum sp. nov., isolated from a freshwater green alga Paulinella chromatophora.	Lee Y, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002377	2017	*
Phylogeny	Cohnella lubricantis sp. nov., isolated from a coolant lubricant solution.	Kampfer P, Glaeser SP, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001654	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20511

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28161

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88215

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398424.1 )

#122207 Collection of Institut Pasteur ; Curators of the CIP; CIP 110695
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Cohnella rhizosphaerae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Cohnella rhizosphaerae DSM 28161

Change proposal

Change proposal