Name: Massilia umbonata LP01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24262

Type strain:

Species: Massilia umbonata

Strain Designation: LP01

Culture col. no.: DSM 26121, CECT 7753

Strain history: <- C. Pozo-Llorente, University of Granada, Institute of water research; LP01 <- M. Diaz

NCBI tax ID(s): 864828 (species)

SI-ID 391806

CECT 7753, DSM 26121

Section

Massilia umbonata LP01 is a mesophilic bacterium that was isolated from mixture of soil and sewage sludge compost.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Massilia*
	Species	**Massilia umbonata**
	Full Scientific Name (LPSN)	Massilia umbonata Rodríguez-Díaz et al. 2014

Synonym

Pseudoduganella umbonata

Information on morphological and physiological properties Morphology

[Ref.: #20644]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20644]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20644]

Culture medium growth

[Ref.: #20644]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20644]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20644]			growth	30 °C

[Ref.: #20644]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #20644]	catalase	+	1.11.1.6
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #20644]	cytochrome-c oxidase	+	1.9.3.1

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #20644]	23921	-	-	-	+	+	+	+	+	+	+	+	+	+	-	+	-	-	+	+	-	+
[Ref.: #20644]	23920	-	-	-	-	-	+	+	+	+	+	+	+	-	+	-	-	-	+	+	-	not determinedn.d.
[Ref.: #20644]	23919	-	-	-	-	-	+	-	+	+	+	+	+	-	+	-	-	-	+	+	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20644]	Sample type/isolated from	mixture of soil and sewage sludge compost
[Ref.: #20644]	Geographic location (country and/or sea, region)	province of Jaén, nearby Guadalimar (soil) and Granada
[Ref.: #20644]	Country	Spain
[Ref.: #20644]	Country ISO 3 Code	ESP
[Ref.: #20644]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Engineered	#Waste	#Sewage sludge
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20644]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20644]	Massilia umbonata strain LP01 16S ribosomal RNA gene, partial sequence	HM053474	1434	ENA	864828 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoduganella umbonata CECT 7753	GCA_014192225	scaffold	GenBank	864828 tax ID	*
[Ref.: #66792]	Massilia umbonata strain CECT 7753	864828.4	wgs	PATRIC	864828 tax ID	*
[Ref.: #66792]	Massilia umbonata DSM 26121	2848879641	complete	JGI IMG/M	864828 tax ID	*
[Ref.: #66792]	Massilia umbonata CECT 7753	2824420946	draft	JGI IMG/M	864828 tax ID	*

[Ref.: #20644]

GC-content

66.0 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #20644]

Culture collection no.

DSM 26121, CECT 7753

[Ref.: #88204]

SI-ID 391806

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Massilia umbonata sp. nov., able to accumulate poly-beta-hydroxybutyrate, isolated from a sewage sludge compost-soil microcosm.	Rodriguez-Diaz M, Cerrone F, Sanchez-Peinado M, SantaCruz-Calvo L, Pozo C, Lopez JG	Int J Syst Evol Microbiol	10.1099/ijs.0.049874-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20644

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26121

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#88204

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID391806.1 )

* These data were automatically processed and therefore are not curated

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