Flindersiella endophytica (DSM 45355, ACM 5289, JCM 31030)

Name: Flindersiella endophytica (DSM 45355, ACM 5289, JCM 31030)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24255

Type strain

Culture col. no. DSM 45355 ACM 5289 JCM 31030 EUM 378

NCBI tax ID(s) 648751

Special Collections DSMZ JCM Wink compendium

History DSMZ <- C. Franco, Flinders Univ., Bedford Park, South Australia; EUM 378 <- O. Kaewkla JCM <-- DSM 45355 <-- C. M. M. Franco; Flinders Univ., Australia; EUM 378 <-- O. Kaewkla.

Links

Flindersiella endophytica DSM 45355 is a bacterium that builds an aerial mycelium and was isolated from surface-sterilized root of Eucalyptus microcarpa .

16S sequence Bacteria

Name and taxonomic classification

SI-ID 405811

JCM 31030,DSM 45355

@ref 20215

Last LPSN update 2026-05-29 08:30:35

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Actinopolymorphaceae

Genus Flindersiella

Species Flindersiella endophytica

Full scientific name Flindersiella endophytica Kaewkla and Franco 2011

Morphology

Colony morphology

@ref	Colony color	Medium used
69386	Ivory (1014)	ISP 6
69386	Khaki grey (7008)	suter with tyrosine
69386	Light ivory (1015)	ISP 2
69386	Light ivory (1015)	ISP 3
69386	Light ivory (1015)	ISP 4
69386	Light ivory (1015)	ISP 5
69386	Light ivory (1015)	ISP 7
69386	Reed green (6013), olive green (6003)	suter without tyrosine

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69386	Aerial mycelium		ISP 2
69386	Aerial mycelium		ISP 3
69386	Aerial mycelium		ISP 4
69386	Aerial mycelium	Signal white (9003)	ISP 5
69386	Aerial mycelium		ISP 6
69386	Aerial mycelium	Signal white (9003)	ISP 7
69386	Aerial mycelium		suter with tyrosine
69386	Aerial mycelium		suter without tyrosine

Pigmentation

@ref	Production	Name
69386		melanin pigment
69386		soluble pigment

Multimedia

@ref:	21222
multimedia content:	DSM_45355.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45355.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	69386
multimedia content:	DSM_45355_image3.jpeg
multimedia.multimedia content:	DSM_45355_image3.jpeg
caption:	Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69386
multimedia content:	DSM_45355_image4.jpeg
multimedia.multimedia content:	DSM_45355_image4.jpeg
caption:	Plates (535, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
21222	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21222	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
21222	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
21222	ISP2 MEDIUM (DSMZ Medium 987)	Medium recipe at MediaDive	Name: ISP2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21222	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69386	NaCl	positive	growth	0-2.5 %

Observation

67770

Observationquinones: MK-10(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69386	22599 ChEBI	arabinose	+	growth
69386	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69386	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
69386	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69386	37684 ChEBI	mannose	+	growth
69386	17268 ChEBI	myo-inositol	+	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69386	16634 ChEBI	raffinose	+	growth
69386	26546 ChEBI	rhamnose	+	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69386	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69386	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69386	-	-	-	-	-	+	+	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69386	not determinedn.d.	+/-	+	+	+/-	+	+/-	-	+/-	+/-	+/-	+/-	+	+	-	+	+	+/-	+	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
21222	surface-sterilized root of Eucalyptus microcarpa (Grey box tree)	Eucalyptus microcarpa	Adelaide, Flinders University campus	Australia	AUS	Australia and Oceania
67770	Surface-sterilized root tissue of a Eucalyptus microcarpa tree on the campus of Flinders Univ.	Eucalyptus microcarpa	Adelaide, South Australia	Australia	AUS	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence FJ805430 (>99% sequence identity) for Flindersiella endophytica subclade from Microbeatlas

Aquatic Samples	439
Soil Samples	5720
Animal Samples	483
Plant Samples	601
Total Samples	7243

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21222	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21222	Flindersiella endophytica strain EUM 378 16S ribosomal RNA gene, partial sequence	FJ805430	1401		648751

GC content

@ref	GC-content (mol%)	Method
21222	68.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tenggerimyces mesophilus gen. nov., sp. nov., a member of the family Nocardioidaceae.	Sun HM, Zhang T, Wei YZ, Liu HY, Yu LY, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000421	2015
Phylogeny	Flindersiella endophytica gen. nov., sp. nov., an endophytic actinobacterium isolated from the root of Grey Box, an endemic eucalyptus tree.	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijs.0.026757-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21222	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45355
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69386	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flindersiella endophytica (DSM 45355, ACM 5289, JCM 31030)

Name and taxonomic classification

Morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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