Nocardioides pacificus (DSM 27278, JCM 19260, XH274)

Name: Nocardioides pacificus (DSM 27278, JCM 19260, XH274)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24253

Type strain

Strain Designation XH274

Culture col. no. DSM 27278 JCM 19260 XH274

NCBI tax ID(s) 1343103

Special Collections DSMZ JCM

History DSMZ <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; XH274 JCM <-- X.-H. Zhang and X. Fan XH274.

Links

Nocardioides pacificus XH274 is a bacterium that was isolated from deep sub-seafloor sediment.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 397444

JCM 19260,DSM 27278

@ref 20215

Last LPSN update 2026-05-29 08:30:35

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides pacificus

Full scientific name Nocardioides pacificus Fan et al. 2014

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20686	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20686	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Observation

67770

Observationquinones: MK-8(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Latitude	Longitude
20686	deep sub-seafloor sediment	South Pacific Gyre at station U1371 (41° 58' S 163° 11' W) at a depth of 107.3–107.4 m below the sea floor	-45.9667	-163.183 -45.9667/-163.183
67770	Deep sub-seafloor sediment from the South Pacific Gyre

Taxonmaps

69479

Global distribution of 16S sequence KC986355 (>99% sequence identity) for Nocardioides pacificus subclade from Microbeatlas

Aquatic Samples	88
Soil Samples	710
Animal Samples	170
Plant Samples	427
Total Samples	1395

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20686	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20686	Nocardioides pacificus strain XH274 16S ribosomal RNA gene, partial sequence	KC986355	1442		1343103

GC content

@ref	GC-content (mol%)	Method
20686	74.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides solisilvae sp. nov., isolated from a forest soil.	Sultanpuram VR, Mothe T, Mohammed F	Antonie Van Leeuwenhoek	10.1007/s10482-015-0455-x	2015
Phylogeny	Nocardioides echinoideorum sp. nov., isolated from sea urchins (Tripneustes gratilla).	Lin SY, Wen CZ, Hameed A, Liu YC, Hsu YH, Shen FT, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.000206	2015
Phylogeny	Nocardioides pacificus sp. nov., isolated from deep sub-seafloor sediment.	Fan X, Qiao Y, Gao X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.059873-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20686	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27278
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Nocardioides pacificus (DSM 27278, JCM 19260, XH274)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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