Name: Nocardioides pacificus XH274
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24253

Type strain:

Species: Nocardioides pacificus

Strain Designation: XH274

Culture col. no.: DSM 27278, JCM 19260

Strain history: X.-H. Zhang and X. Fan XH274.

NCBI tax ID(s): 1343103 (species)

SI-ID 397444

DSM 27278

Section

Nocardioides pacificus XH274 is a mesophilic bacterium that was isolated from deep sub-seafloor sediment.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides pacificus**
	Full Scientific Name (LPSN)	Nocardioides pacificus Fan et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20686]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #20686]

Culture medium growth

[Ref.: #20686]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20686]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20686]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #20686]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20686]	Sample type/isolated from	deep sub-seafloor sediment
[Ref.: #20686]	Geographic location (country and/or sea, region)	South Pacific Gyre at station U1371 (41° 58' S 163° 11' W) at a depth of 107.3–107.4 m below the sea floor
[Ref.: #20686]	Geographic location	-45.9667°/-163.1830°

[Ref.: #67770]	Sample type/isolated from	Deep sub-seafloor sediment from the South Pacific Gyre
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC986355 (>99% sequence identity) for Nocardioides pacificus subclade from Microbeatlas

Aquatic Samples	88
Soil Samples	710
Animal Samples	170
Plant Samples	427
Total Samples	1395

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20686]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20686]	Nocardioides pacificus strain XH274 16S ribosomal RNA gene, partial sequence	KC986355	1442	ENA	1343103 tax ID

[Ref.: #20686]

GC-content

74.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #20686]

Culture collection no.

DSM 27278, JCM 19260

[Ref.: #88195]

SI-ID 397444

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides solisilvae sp. nov., isolated from a forest soil.	Sultanpuram VR, Mothe T, Mohammed F	Antonie Van Leeuwenhoek	10.1007/s10482-015-0455-x	2015	*
Phylogeny	Nocardioides echinoideorum sp. nov., isolated from sea urchins (Tripneustes gratilla).	Lin SY, Wen CZ, Hameed A, Liu YC, Hsu YH, Shen FT, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.000206	2015	*
Phylogeny	Nocardioides pacificus sp. nov., isolated from deep sub-seafloor sediment.	Fan X, Qiao Y, Gao X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.059873-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20686

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27278

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88195

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397444.1 )

* These data were automatically processed and therefore are not curated

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