Gordonia jinhuaensis (DSM 46760, CGMCC 1.12827, NBRC 110001)

Name: Gordonia jinhuaensis (DSM 46760, CGMCC 1.12827, NBRC 110001)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24240

Type strain

Culture col. no. DSM 46760 CGMCC 1.12827 NBRC 110001 NRRL B-59111 ZYR 51 1 more

NCBI tax ID(s) 1517702

Special Collections DSMZ JCM

History DSMZ <- W.-J. Li, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; ZYR 51 <- L.-X. Ding, Yunnan University, China JCM <-- W.-J. Li ZYR 51.

Links

Gordonia jinhuaensis DSM 46760 is a bacterium that was isolated from pharmaceutical wastewater.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401216

NBRC 110001,DSM 46760

@ref 20215

Last LPSN update 2026-05-29 08:30:35

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Gordoniaceae

Genus Gordonia

Species Gordonia jinhuaensis

Full scientific name Gordonia jinhuaensis Li et al. 2014

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		91
125438		90.482	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20593	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20593	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.106
125439	obligate aerobe	98.806

Spore formation

@ref	Spore formation	Confidence
125439		97.291

Observation

67770

Observationquinones: MK-9(H₂)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Industrial wastewater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
20593	pharmaceutical wastewater	Zhejiang Province, Jinhua City (E119.64°, N 29.12°)	China	CHN	Asia	29.12	119.64 29.12/119.64
67770	Pharmaceutical wastewater	Jinhua City, Zhejiang Province, eastern China	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20593	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1463979v1 assembly for Gordonia jinhuaensis CGMCC 1.12827	contig	GCA_014639795	1517702.3	2996023582	1517702	51.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20593	Gordonia jinhuaensis strain ZYR 51 16S ribosomal RNA gene, partial sequence	KJ700483	1524		1517702

GC content

@ref	GC-content (mol%)	Method
20593	67.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1463979v1 assembly for Gordonia jinhuaensis CGMCC 1.12827
NCBI: GCA_014639795

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.81	no
125439	gram_stain	BacteriaNetⓘ	positive	69.08	no
125439	spore_formation	BacteriaNetⓘ	no	97.29	no
125439	motility	BacteriaNetⓘ	yes	54.79	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gordonia jinhuaensis strain CGMCC 1.12827
PATRIC: 1517702.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.48	no
125438	anaerobic	anaerobicⓘ	no	97.91	no
125438	spore-forming	spore-formingⓘ	no	66.26	no
125438	aerobic	aerobicⓘ	yes	92.11	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Wastewater from the Edible Oil Industry as a Potential Source of Lipase- and Surfactant-Producing Actinobacteria.	Welz P, Swanepoel G, Weels S, Le Roes-Hill M.	Microorganisms	10.3390/microorganisms9091987	2021
	Focusing on Gordonia Infections: Distribution, Antimicrobial Susceptibilities and Phylogeny.	Pino-Rosa S, Medina-Pascual MJ, Carrasco G, Garrido N, Villalon P, Valiente M, Valdezate S.	Antibiotics (Basel)	10.3390/antibiotics12111568	2023
Phylogeny	Gordonia jinhuaensis sp. nov., a novel actinobacterium, isolated from a VBNC (viable but non-culturable) state in pharmaceutical wastewater.	Li SH, Jin Y, Cheng J, Park DJ, Kim CJ, Hozzein WN, Wadaan MA, Shu WS, Ding LX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0207-3	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20593	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46760
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gordonia jinhuaensis (DSM 46760, CGMCC 1.12827, NBRC 110001)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014639795

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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