Name: Gordonia jinhuaensis DSM 46760
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24240

Type strain:

Species: Gordonia jinhuaensis

Culture col. no.: DSM 46760, CGMCC 1.12827, NBRC 110001, NRRL B-59111, ZYR 51, JCM 30100

Strain history: W.-J. Li ZYR 51.

NCBI tax ID(s): 1517702 (species)

SI-ID 401216

DSM 46760

Section

Gordonia jinhuaensis DSM 46760 is a mesophilic bacterium that was isolated from pharmaceutical wastewater.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Gordoniaceae*
	Genus	*Gordonia*
	Species	**Gordonia jinhuaensis**
	Full Scientific Name (LPSN)	Gordonia jinhuaensis Li et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %97.404

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20593]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #20593]

Culture medium growth

[Ref.: #20593]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20593]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20593]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #20593]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20593]	Sample type/isolated from	pharmaceutical wastewater
[Ref.: #20593]	Geographic location (country and/or sea, region)	Zhejiang Province, Jinhua City (E119.64°, N 29.12°)
[Ref.: #20593]	Country	China
[Ref.: #20593]	Country ISO 3 Code	CHN
[Ref.: #20593]	Continent	Asia
[Ref.: #20593]	Geographic location	29.1200°/119.6400°

[Ref.: #67770]	Sample type/isolated from	Pharmaceutical wastewater
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jinhua City, Zhejiang Province, eastern China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Industrial wastewater

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20593]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20593]	Gordonia jinhuaensis strain ZYR 51 16S ribosomal RNA gene, partial sequence	KJ700483	1524	ENA	1517702 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gordonia jinhuaensis CGMCC 1.12827	GCA_014639795	contig	GenBank	1517702 tax ID	*
[Ref.: #66792]	Gordonia jinhuaensis strain CGMCC 1.12827	1517702.3	wgs	PATRIC	1517702 tax ID	*

[Ref.: #20593]

GC-content

67.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gordonia jinhuaensis strain CGMCC 1.12827 PATRIC: 1517702.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gordonia jinhuaensis strain CGMCC 1.12827 PATRIC: 1517702.3
[Ref.: #69480]	motile	no	96.078	no
[Ref.: #69480]	gram-positive	yes	91.263	no
[Ref.: #69480]	anaerobic	no	99.411	no
[Ref.: #69480]	aerobic	yes	86.254	no
[Ref.: #69480]	halophile	no	85.441	no
[Ref.: #69480]	spore-forming	no	88.389	no
[Ref.: #69480]	glucose-util	yes	89.702	no
[Ref.: #69480]	flagellated	no	98.888	no
[Ref.: #69480]	thermophile	no	98.257	yes
[Ref.: #69480]	glucose-ferment	no	89.22	no

Availability in culture collections External links

[Ref.: #20593]

Culture collection no.

DSM 46760, CGMCC 1.12827, NBRC 110001, NRRL B-59111, ZYR 51, JCM 30100

[Ref.: #88183]

SI-ID 401216

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gordonia jinhuaensis sp. nov., a novel actinobacterium, isolated from a VBNC (viable but non-culturable) state in pharmaceutical wastewater.	Li SH, Jin Y, Cheng J, Park DJ, Kim CJ, Hozzein WN, Wadaan MA, Shu WS, Ding LX, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0207-3	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20593

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46760

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88183

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401216.1 )

* These data were automatically processed and therefore are not curated

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Gordonia jinhuaensis strain CGMCC 1.12827

Gordonia jinhuaensis strain CGMCC 1.12827

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