Allochromatium vinosum (DSM 180, ATCC 17899, D)

Name: Allochromatium vinosum (DSM 180, ATCC 17899, D)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2424

Type strain

Strain Designation D, Roelofsoen D

Culture col. no. DSM 180 ATCC 17899 D Roelofsoen D

NCBI tax ID(s) 572477 1049

Special Collections DSMZ

Links

Allochromatium vinosum D is an anaerobe, mesophilic prokaryote that was isolated from ditch water.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 47074

DSM 180,ATCC 17899,NCIMB 10441,KCTC 2671,NBRC 103801

@ref 20215

Last LPSN update 2025-12-16 09:47:18

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Chromatiales

Family Chromatiaceae

Genus Allochromatium

Species Allochromatium vinosum

Full scientific name Allochromatium vinosum (Ehrenberg 1838) Imhoff et al. 1998

Synonyms (2)

"Monas vinosa"
Chromatium vinosum

BacDive ID	Other strains from **Allochromatium vinosum** (7)	Type strain
2426	A. vinosum 2811, DSM 183, Pfennig 2811
2427	A. vinosum 6412, DSM 185, Pfennig 6412
2428	A. vinosum 6712, DSM 186, Pfennig 6712
2429	A. vinosum 8211, Trüper 8211, DSM 189
2431	A. vinosum 9511, DSM 196
2432	A. vinosum de Boer, DSM 1686
2433	A. vinosum N-9, DSM 1713

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.494

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5	PFENNIG'S MEDIUM I (modified 1988, for purple sulfur bacteria) (DSMZ Medium 28)		Medium recipe at MediaDive	Name: PFENNIG'S MEDIUM I (DSMZ Medium 28) Composition: NaHCO3 1.5 g/l Na2S x 9 H2O 0.592592 g/l MgSO4 x 7 H2O 0.500001 g/l KCl 0.349999 g/l KH2PO4 0.349999 g/l Ammonium chloride 0.349999 g/l Pyruvic acid sodium salt 0.25 g/l Dextrose 0.25 g/l CaCl2 x 2 H2O 0.25 g/l Yeast extract 0.25 g/l Ammonium acetate 0.25 g/l Na2-EDTA 0.003 g/l Resazurin 0.00225 g/l FeSO4 x 7 H2O 0.0011 g/l Vitamin B12 0.001 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		90.8

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	hydrogen production	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	ubiquinone biosynthesis	100	7 of 7
66794	vitamin K metabolism	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	photosynthesis	100	14 of 14
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	cardiolipin biosynthesis	100	7 of 7
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	phenylalanine metabolism	92.31	12 of 13
66794	lipid A biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	pentose phosphate pathway	81.82	9 of 11
66794	glycine betaine biosynthesis	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	vitamin B12 metabolism	79.41	27 of 34
66794	NAD metabolism	77.78	14 of 18
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	butanoate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	vitamin B6 metabolism	72.73	8 of 11
66794	purine metabolism	72.34	68 of 94
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	starch degradation	70	7 of 10
66794	threonine metabolism	70	7 of 10
66794	sulfate reduction	69.23	9 of 13
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	pyrimidine metabolism	68.89	31 of 45
66794	flavin biosynthesis	66.67	10 of 15
66794	enterobactin biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	glycolysis	64.71	11 of 17
66794	glutathione metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	degradation of sugar alcohols	62.5	10 of 16
66794	Entner Doudoroff pathway	60	6 of 10
66794	propionate fermentation	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	lipid metabolism	58.06	18 of 31
66794	methionine metabolism	57.69	15 of 26
66794	propanol degradation	57.14	4 of 7
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	chlorophyll metabolism	55.56	10 of 18
66794	lysine metabolism	54.76	23 of 42
66794	arginine metabolism	54.17	13 of 24
66794	leucine metabolism	53.85	7 of 13
66794	histidine metabolism	51.72	15 of 29
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	carnitine metabolism	50	4 of 8
66794	suberin monomers biosynthesis	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	adipate degradation	50	1 of 2
66794	oxidative phosphorylation	47.25	43 of 91
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	polyamine pathway	43.48	10 of 23
66794	tyrosine metabolism	42.86	6 of 14
66794	tryptophan metabolism	42.11	16 of 38
66794	arachidonate biosynthesis	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	cellulose degradation	40	2 of 5
66794	ketogluconate metabolism	37.5	3 of 8
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	cyanate degradation	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	urea cycle	30.77	4 of 13
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	metabolism of disaccharids	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	degradation of pentoses	25	7 of 28
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	arachidonic acid metabolism	22.22	4 of 18
66794	allantoin degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Engineered	#Built environment	-

Isolation

Sample typeditch water

Taxonmaps

69479

Global distribution of 16S sequence FM178268 (>99% sequence identity) for Allochromatium from Microbeatlas

Aquatic Samples	525
Soil Samples	87
Animal Samples	49
Plant Samples	10
Total Samples	671

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2548v1 assembly for Allochromatium vinosum DSM 180	complete	GCA_000025485	572477.4	646564502	572477	99.22

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Allochromatium vinosum DSM 180 16S ribosomal RNA gene, partial sequence	FJ812038	1267	572477
20218	Allochromatium vinosum DSM 180 16S-23S ribosomal RNA intergenic spacer, partial sequence	FJ823965	420	572477
20218	Allochromatium vinosum partial 16S rRNA gene, type strain DSM 180T	FM178268	1462	572477

GC content

GC-content (mol%)64.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Allochromatium vinosum DSM 180
PATRIC: 572477.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	90.80	no
125439	motility	BacteriaNetⓘ	yes	62.80	no
125439	gram_stain	BacteriaNetⓘ	negative	80.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	72.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Allochromatium vinosum DSM 180 DSM 180
NCBI: GCA_000025485.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.49	no
125438	anaerobic	anaerobicⓘ	yes	74.74	yes
125438	aerobic	aerobicⓘ	no	78.95	yes
125438	spore-forming	spore-formingⓘ	no	85.74	no
125438	thermophilic	thermophileⓘ	no	88.29	no
125438	flagellated	motile2+ⓘ	yes	81.11	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	High-resolution structure and biochemical properties of the LH1-RC photocomplex from the model purple sulfur bacterium, Allochromatium vinosum.	Tani K, Kanno R, Harada A, Kobayashi Y, Minamino A, Takenaka S, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY.	Commun Biol	10.1038/s42003-024-05863-w	2024
Genetics	The Complete Genome of a Novel Typical Species Thiocapsa bogorovii and Analysis of Its Central Metabolic Pathways.	Petushkova E, Khasimov M, Mayorova E, Delegan Y, Frantsuzova E, Bogun A, Galkina E, Tsygankov A.	Microorganisms	10.3390/microorganisms12020391	2024
	Complete Genome Sequence of Strain SS-5, a Magnetotactic Gammaproteobacterium Isolated from the Salton Sea, a Shallow, Saline, Endorheic Rift Lake Located on the San Andreas Fault in California.	Trubitsyn D, Monteil CL, Geurink C, Morillo-Lopez V, Gonzaga Paula de Almeida L, Ribeiro de Vasconcelos AT, Abreu F, Bazylinski DA, Lefevre CT.	Microbiol Resour Announc	10.1128/mra.00928-20	2021
Genetics	Metabolism of the Genus Guyparkeria Revealed by Pangenome Analysis.	Lau Vetter MCY, Huang B, Fenske L, Blom J.	Microorganisms	10.3390/microorganisms10040724	2022
	Evidence for autotrophic growth of purple sulfur bacteria using pyrite as electron and sulfur source.	Alarcon HV, Mohl JE, Chong GW, Betancourt A, Wang Y, Leng W, White JC, Xu J.	Appl Environ Microbiol	10.1128/aem.00863-24	2024
	Elucidation of master allostery essential for circadian clock oscillation in cyanobacteria.	Furuike Y, Mukaiyama A, Ouyang D, Ito-Miwa K, Simon D, Yamashita E, Kondo T, Akiyama S.	Sci Adv	10.1126/sciadv.abm8990	2022
	Enzyme catalyzes ester bond synthesis and hydrolysis: The key step for sustainable usage of plastics.	Lai J, Huang H, Lin M, Xu Y, Li X, Sun B.	Front Microbiol	10.3389/fmicb.2022.1113705	2022
	A Novel Nucleic Lateral Flow Assay for Screening phaR-Containing Bacillus spp.	Wint NY, Han KK, Yamprayoonswat W, Ruangsuj P, Mangmool S, Promptmas C, Yasawong M.	J Microbiol Biotechnol	10.4014/jmb.1907.07045	2019
	Mutation study of DsrM from Allochromatium vinosum using the amino acid sequences.	Ghosh S, Bagchi A.	Meta Gene	10.1016/j.mgene.2013.10.006	2013
Phylogeny	Reductive evolution and unique predatory mode in the CPR bacterium Vampirococcus lugosii.	Moreira D, Zivanovic Y, Lopez-Archilla AI, Iniesto M, Lopez-Garcia P.	Nat Commun	10.1038/s41467-021-22762-4	2021
Phylogeny	Genomic Comparison, Phylogeny and Taxonomic Reevaluation of the Ectothiorhodospiraceae and Description of Halorhodospiraceae fam. nov. and Halochlorospira gen. nov.	Imhoff JF, Kyndt JA, Meyer TE.	Microorganisms	10.3390/microorganisms10020295	2022
Genetics	Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2).	Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU.	Genomics Inform	10.5808/gi.2020.18.3.e28	2020
Genetics	Genomes of "Spiribacter", a streamlined, successful halophilic bacterium.	Lopez-Perez M, Ghai R, Leon MJ, Rodriguez-Olmos A, Copa-Patino JL, Soliveri J, Sanchez-Porro C, Ventosa A, Rodriguez-Valera F.	BMC Genomics	10.1186/1471-2164-14-787	2013
	Daily rhythmicity in coastal microbial mats.	Hornlein C, Confurius-Guns V, Stal LJ, Bolhuis H.	NPJ Biofilms Microbiomes	10.1038/s41522-018-0054-5	2018
Metabolism	Complete genome sequence of Halorhodospira halophila SL1.	Challacombe JF, Majid S, Deole R, Brettin TS, Bruce D, Delano SF, Detter JC, Gleasner CD, Han CS, Misra M, Reitenga KG, Mikhailova N, Woyke T, Pitluck S, Nolan M, Land ML, Saunders E, Tapia R, Lapidus A, Ivanova N, Hoff WD.	Stand Genomic Sci	10.4056/sigs.3677284	2013
Metabolism	Thiosulfate transfer mediated by DsrE/TusA homologs from acidothermophilic sulfur-oxidizing archaeon Metallosphaera cuprina.	Liu LJ, Stockdreher Y, Koch T, Sun ST, Fan Z, Josten M, Sahl HG, Wang Q, Luo YM, Liu SJ, Dahl C, Jiang CY.	J Biol Chem	10.1074/jbc.m114.591669	2014
	Metabolomic profiling of the purple sulfur bacterium Allochromatium vinosum during growth on different reduced sulfur compounds and malate.	Weissgerber T, Watanabe M, Hoefgen R, Dahl C.	Metabolomics	10.1007/s11306-014-0649-7	2014
Metabolism	Thiosulfate oxidation by Thiomicrospira thermophila: metabolic flexibility in response to ambient geochemistry.	Houghton JL, Foustoukos DI, Flynn TM, Vetriani C, Bradley AS, Fike DA.	Environ Microbiol	10.1111/1462-2920.13232	2016
Metabolism	Optogenetic Module for Dichromatic Control of c-di-GMP Signaling.	Ryu MH, Fomicheva A, Moskvin OV, Gomelsky M.	J Bacteriol	10.1128/jb.00014-17	2017
Genetics	Comparative genome analysis of marine purple sulfur bacterium Marichromatium gracile YL28 reveals the diverse nitrogen cycle mechanisms and habitat-specific traits.	Zhu B, Zhang X, Zhao C, Chen S, Yang S.	Sci Rep	10.1038/s41598-018-36160-2	2018
Enzymology	Distribution and origin of oxygen-dependent and oxygen-independent forms of Mg-protoporphyrin monomethylester cyclase among phototrophic proteobacteria.	Boldareva-Nuianzina EN, Blahova Z, Sobotka R, Koblizek M.	Appl Environ Microbiol	10.1128/aem.00104-13	2013
Genetics	Genome sequence of Dichelobacter nodosus JKS-07B isolate from J&K, India associated with virulent footrot of sheep.	Qureshi S, Wani SA, Farooq S, Kashoo Z, Bhat B, Isfaqul Hussain M, Habib A, Altaf Bhat M, Khan SM, Pandit AA, Malla JA, Dar BA.	Sci Prog	10.1177/00368504211057678	2021
Enzymology	Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases.	Muller AL, Kjeldsen KU, Rattei T, Pester M, Loy A.	ISME J	10.1038/ismej.2014.208	2015
	Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum.	Stewart FJ, Dmytrenko O, Delong EF, Cavanaugh CM.	Front Microbiol	10.3389/fmicb.2011.00134	2011
Metabolism	DsrR, a novel IscA-like protein lacking iron- and Fe-S-binding functions, involved in the regulation of sulfur oxidation in Allochromatium vinosum.	Grimm F, Cort JR, Dahl C.	J Bacteriol	10.1128/jb.01269-09	2010
Genetics	The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis.	Dmytrenko O, Russell SL, Loo WT, Fontanez KM, Liao L, Roeselers G, Sharma R, Stewart FJ, Newton IL, Woyke T, Wu D, Lang JM, Eisen JA, Cavanaugh CM.	BMC Genomics	10.1186/1471-2164-15-924	2014
Genetics	Osmotic Adaptation and Compatible Solute Biosynthesis of Phototrophic Bacteria as Revealed from Genome Analyses.	Imhoff JF, Rahn T, Kunzel S, Keller A, Neulinger SC.	Microorganisms	10.3390/microorganisms9010046	2020
	D1FHS, the Type Strain of the Ammonia-Oxidizing Bacterium Nitrosococcus wardiae spec. nov.: Enrichment, Isolation, Phylogenetic, and Growth Physiological Characterization.	Wang L, Lim CK, Dang H, Hanson TE, Klotz MG.	Front Microbiol	10.3389/fmicb.2016.00512	2016
	A microbial eukaryote with a unique combination of purple bacteria and green algae as endosymbionts.	Munoz-Gomez SA, Kreutz M, Hess S.	Sci Adv	10.1126/sciadv.abg4102	2021
	Complete genome sequence of Thioalkalivibrio sp. K90mix.	Muyzer G, Sorokin DY, Mavromatis K, Lapidus A, Foster B, Sun H, Ivanova N, Pati A, D'haeseleer P, Woyke T, Kyrpides NC.	Stand Genomic Sci	10.4056/sigs.2315092	2011
Metabolism	Bacterial RuBisCO is required for efficient Bradyrhizobium/Aeschynomene symbiosis.	Gourion B, Delmotte N, Bonaldi K, Nouwen N, Vorholt JA, Giraud E.	PLoS One	10.1371/journal.pone.0021900	2011
	A novel bacterial thiosulfate oxidation pathway provides a new clue about the formation of zero-valent sulfur in deep sea.	Zhang J, Liu R, Xi S, Cai R, Zhang X, Sun C.	ISME J	10.1038/s41396-020-0684-5	2020
Phylogeny	Application of denaturing high-performance liquid chromatography for monitoring sulfate-reducing bacteria in oil fields.	Priha O, Nyyssonen M, Bomberg M, Laitila A, Simell J, Kapanen A, Juvonen R.	Appl Environ Microbiol	10.1128/aem.01015-13	2013
	Acclimation of the photosynthetic response of Chromatium vinosum to light-limiting conditions.	Sanchez O, van Gemerden H, Mas J.	Arch Microbiol	10.1007/s002030050660	1998
	Kinetics of photoacclimation in cultures of Chromatium vinosum DSM 185 during shifts in light irradiance.	Sanchez O, Mas J.	Microbiology (Reading)	10.1099/13500872-145-4-827	1999
Genetics	Draft Genome Sequence of Chromatium okenii Isolated from the Stratified Alpine Lake Cadagno.	Luedin SM, Liechti N, Cox RP, Danza F, Frigaard NU, Posth NR, Pothier JF, Roman S, Storelli N, Wittwer M, Tonolla M.	Sci Rep	10.1038/s41598-018-38202-1	2019
Enzymology	Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.	Gregersen LH, Bryant DA, Frigaard NU.	Front Microbiol	10.3389/fmicb.2011.00116	2011
Metabolism	Evolution and diversity of periplasmic proteins involved in copper homeostasis in gamma proteobacteria.	Hernandez-Montes G, Arguello JM, Valderrama B.	BMC Microbiol	10.1186/1471-2180-12-249	2012
Metabolism	p-Cymene Promotes Its Catabolism through the p-Cymene and the p-Cumate Pathways, Activates a Stress Response and Reduces the Biofilm Formation in Burkholderia xenovorans LB400.	Agullo L, Romero-Silva MJ, Domenech M, Seeger M.	PLoS One	10.1371/journal.pone.0169544	2017
Genetics	MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle.	De Anda V, Zapata-Penasco I, Poot-Hernandez AC, Eguiarte LE, Contreras-Moreira B, Souza V.	Gigascience	10.1093/gigascience/gix096	2017
Enzymology	[NiFe] hydrogenase from Alteromonas macleodii with unusual stability in the presence of oxygen and high temperature.	Vargas WA, Weyman PD, Tong Y, Smith HO, Xu Q.	Appl Environ Microbiol	10.1128/aem.01559-10	2011
Metabolism	Plasmid pP62BP1 isolated from an Arctic Psychrobacter sp. strain carries two highly homologous type II restriction-modification systems and a putative organic sulfate metabolism operon.	Lasek R, Dziewit L, Bartosik D.	Extremophiles	10.1007/s00792-012-0435-2	2012
	Conservation analysis of the CydX protein yields insights into small protein identification and evolution.	Allen RJ, Brenner EP, VanOrsdel CE, Hobson JJ, Hearn DJ, Hemm MR.	BMC Genomics	10.1186/1471-2164-15-946	2014
Metabolism	Isolation and characterization of the small subunit of the uptake hydrogenase from the cyanobacterium Nostoc punctiforme.	Raleiras P, Kellers P, Lindblad P, Styring S, Magnuson A.	J Biol Chem	10.1074/jbc.m113.468587	2013
Genetics	Inteins as indicators of gene flow in the halobacteria.	Soucy SM, Fullmer MS, Papke RT, Gogarten JP.	Front Microbiol	10.3389/fmicb.2014.00299	2014
Phylogeny	Long-term population dynamics of phototrophic sulfur bacteria in the chemocline of Lake Cadagno, Switzerland.	Tonolla M, Peduzzi R, Hahn D.	Appl Environ Microbiol	10.1128/aem.71.7.3544-3550.2005	2005
	The novel regulatory ncRNA, NfiS, optimizes nitrogen fixation via base pairing with the nitrogenase gene nifK mRNA in Pseudomonas stutzeri A1501.	Zhan Y, Yan Y, Deng Z, Chen M, Lu W, Lu C, Shang L, Yang Z, Zhang W, Wang W, Li Y, Ke Q, Lu J, Xu Y, Zhang L, Xie Z, Cheng Q, Elmerich C, Lin M.	Proc Natl Acad Sci U S A	10.1073/pnas.1604514113	2016
	Distribution of genes encoding nucleoid-associated protein homologs in plasmids.	Takeda T, Yun CS, Shintani M, Yamane H, Nojiri H.	Int J Evol Biol	10.4061/2011/685015	2011
Metabolism	Microbial production of lactate-containing polyesters.	Yang JE, Choi SY, Shin JH, Park SJ, Lee SY.	Microb Biotechnol	10.1111/1751-7915.12066	2013
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
	Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics.	Emerson D, Field EK, Chertkov O, Davenport KW, Goodwin L, Munk C, Nolan M, Woyke T.	Front Microbiol	10.3389/fmicb.2013.00254	2013
Phylogeny	Phylogeny of replication initiator protein TrfA reveals a highly divergent clade of incompatibility group P1 plasmids.	Stenger DC, Lee MW.	Appl Environ Microbiol	10.1128/aem.02789-10	2011
Metabolism	Construction of Fluorescent Analogs to Follow the Uptake and Distribution of Cobalamin (Vitamin B₁₂) in Bacteria, Worms, and Plants.	Lawrence AD, Nemoto-Smith E, Deery E, Baker JA, Schroeder S, Brown DG, Tullet JMA, Howard MJ, Brown IR, Smith AG, Boshoff HI, Barry CE, Warren MJ.	Cell Chem Biol	10.1016/j.chembiol.2018.04.012	2018
Transcriptome	Complete genome of the thermophilic purple sulfur Bacterium Thermochromatium tepidum compared to Allochromatium vinosum and other Chromatiaceae.	Sattley WM, Swingley WD, Burchell BM, Dewey ED, Hayward MK, Renbarger TL, Shaffer KN, Stokes LM, Gurbani SA, Kujawa CM, Nuccio DA, Schladweiler J, Touchman JW, Wang-Otomo ZY, Blankenship RE, Madigan MT	Photosynth Res	10.1007/s11120-021-00870-y	2021
Metabolism	Protein dynamics and molecular motions study in relation to molecular interaction between proteins from sulfur oxidizing proteobacteria Allochromatium vinosum.	Ghosh S, Bagchi A	J Biomol Struct Dyn	10.1080/07391102.2020.1754914	2020
Metabolism	Structural study to analyze the DNA-binding properties of DsrC protein from the dsr operon of sulfur-oxidizing bacterium Allochromatium vinosum.	Ghosh S, Bagchi A	J Mol Model	10.1007/s00894-019-3945-3	2019
Metabolism	Effect of Illumination Intensity and Inhibition of Carotenoid Biosynthesis on Assembly of Peripheral Light-Gathering Complexes in Purple Sulfur Bacteria C Allochromatium vinosum ATCC 17899.	Bol'shakov MA, Ashikhmin AA, Makhneva ZK, Moskalenko AA	Mikrobiologiia		2016
Metabolism	Geochemically distinct carbon isotope distributions in Allochromatium vinosum DSM 180(T) grown photoautotrophically and photoheterotrophically.	Tang T, Mohr W, Sattin SR, Rogers DR, Girguis PR, Pearson A	Geobiology	10.1111/gbi.12221	2017
Metabolism	Genome-wide transcriptional profiling of the purple sulfur bacterium Allochromatium vinosum DSM 180T during growth on different reduced sulfur compounds.	Weissgerber T, Dobler N, Polen T, Latus J, Stockdreher Y, Dahl C	J Bacteriol	10.1128/JB.00154-13	2013
Genetics	Complete genome sequence of Allochromatium vinosum DSM 180(T).	Weissgerber T, Zigann R, Bruce D, Chang YJ, Detter JC, Han C, Hauser L, Jeffries CD, Land M, Munk AC, Tapia R, Dahl C	Stand Genomic Sci	10.4056/sigs.2335270	2011
Phylogeny	The genus Allochromatium (Chromatiales Chromatiaceae) revisited: a study on its intragenic structure based on multilocus sequence analysis (MLSA) and DNA-DNA hybridization (DDH).	Serrano W, Amann R, Rossello-Mora R, Herbert RA, Fischer U	Syst Appl Microbiol	10.1016/j.syapm.2011.06.002	2011
Metabolism	Altered composition of Ralstonia eutropha poly(hydroxyalkanoate) through expression of PHA synthase from Allochromatium vinosum ATCC 35206.	Aneja KK, Ashby RD, Solaiman DK	Biotechnol Lett	10.1007/s10529-009-0052-z	2009
Metabolism	Novel genes of the dsr gene cluster and evidence for close interaction of Dsr proteins during sulfur oxidation in the phototrophic sulfur bacterium Allochromatium vinosum.	Dahl C, Engels S, Pott-Sperling AS, Schulte A, Sander J, Lubbe Y, Deuster O, Brune DC	J Bacteriol	10.1128/JB.187.4.1392-1404.2005	2005
Enzymology	Cloning and sequencing of the gene encoding the high potential iron-sulfur protein (HiPIP) from the purple sulfur bacterium Chromatium vinosum.	Bruser T, Truper HG, Dahl C	Biochim Biophys Acta	10.1016/s0167-4781(97)00033-x	1997
Enzymology	Insertional gene inactivation in a phototrophic sulphur bacterium: APS-reductase-deficient mutants of Chromatium vinosum.	Dahl C	Microbiology (Reading)	10.1099/13500872-142-12-3363	1996
Metabolism	Spectroscopic characterization of nitrosylheme in nitric oxide complexes of ferric and ferrous cytochrome c' from photosynthetic bacteria.	Yoshimura T, Fujii S, Kamada H, Yamaguchi K, Suzuki S, Shidara S, Takakuwa S	Biochim Biophys Acta	10.1016/0167-4838(95)00187-5	1996
Enzymology	Electron paramagnetic resonance studies of ferric cytochrome c' from photosynthetic bacteria.	Fujii S, Yoshimura T, Kamada H, Yamaguchi K, Suzuki S, Shidara S, Takakuwa S	Biochim Biophys Acta	10.1016/0167-4838(95)00092-9	1995
	Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16^T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.	Luedin SM, Pothier JF, Danza F, Storelli N, Frigaard NU, Wittwer M, Tonolla M.	Stand Genomic Sci	10.1186/s40793-018-0317-z	2018
Phylogeny	Allochromatium humboldtianum sp. nov., isolated from soft coastal sediments.	Serrano W, Schrubbers J, Amann R, Fischer U	Int J Syst Evol Microbiol	10.1099/ijs.0.000364	2015

References

#5	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 180
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Allochromatium vinosum (DSM 180, ATCC 17899, D)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000025485

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media