Micromonospora kangleipakensis (DSM 45612, JCM 17696, MBRL 34)

Name: Micromonospora kangleipakensis (DSM 45612, JCM 17696, MBRL 34)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24213

Type strain

Culture col. no. DSM 45612 JCM 17696 MBRL 34

NCBI tax ID(s) 1077942

Special Collections DSMZ JCM Literature strains

History DSMZ <- S.-K. Tang, YIM; MBRL 34T <- S. Nimaichand JCM <-- S.-K. Tang and S. Nimaichand MBRL 34.

Links

Micromonospora kangleipakensis DSM 45612 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from limestone quarry.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132629

JCM 17696

@ref 20215

Last LPSN update 2026-05-29 08:30:34

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora kangleipakensis

Full scientific name Micromonospora kangleipakensis Nimaichand et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell width	Confidence
31123	positive	0.87 µm
125438	positive		90.932
125439	positive		99.364

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
31123	positive	growth	15-37
31123	positive	optimum	28
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
31123	positive	optimum	6
31123	positive	growth	05-07

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31123	aerobe
125438	aerobe	91.725
125439	obligate aerobe	99.719

Spore formation

@ref	Spore formation	Confidence
31123
125438		91.335

Observation

67770

Observationquinones: MK-10(H₆), MK-10(H₂) MK-11(H₄), MK-10(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31123	16449 ChEBI	alanine	+	carbon source
31123	29987 ChEBI	glutamate	+	carbon source
31123	25017 ChEBI	leucine	+	carbon source
31123	37684 ChEBI	mannose	+	carbon source
31123	17822 ChEBI	serine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31123	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Geologic
#Engineered	#Other	#Mine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
20659	limestone quarry	Hungpung, Manipur (25.05 °N, 94.33 °E)	India	IND	Asia	25.05	94.33 25.05/94.33
67770	Limestone quarry at Hundung	Manipur	India	IND	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20659	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM421761v1 assembly for Micromonospora kangleipakensis DSM 45612	contig	GCA_004217615	1077942.3	2806310638	1077942	73.08

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20659	Micromonospora kangleipakensis strain MBRL 34 16S ribosomal RNA gene, partial sequence	JN560152	1433		1077942
124043	Micromonospora kangleipakensis strain MBRL 34 16S ribosomal RNA gene, partial sequence.	KP883254	742		1077942

GC content

@ref	GC-content (mol%)	Method
20659	73.5	high performance liquid chromatography (HPLC)
31123	73.5
67770	73.46	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM421761v1 assembly for Micromonospora kangleipakensis DSM 45612
NCBI: GCA_004217615

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.72	no
125439	gram_stain	BacteriaNetⓘ	positive	99.36	no
125439	motility	BacteriaNetⓘ	no	89.80	no
125439	spore_formation	BacteriaNetⓘ	yes	80.43	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora kangleipakensis strain DSM 45612
PATRIC: 1077942.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.93	yes
125438	anaerobic	anaerobicⓘ	no	95.71	no
125438	spore-forming	spore-formingⓘ	yes	91.34	yes
125438	aerobic	aerobicⓘ	yes	91.73	yes
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequences of two Micromonospora strains isolated from the root nodules of Alnus glutinosa.	Thompson RM, Fox EM, Montero-Calasanz MdC.	Microbiol Resour Announc	10.1128/mra.01131-23	2024
	Actinobacterial diversity in limestone deposit sites in Hundung, Manipur (India) and their antimicrobial activities.	Nimaichand S, Devi AM, Tamreihao K, Ningthoujam DS, Li WJ.	Front Microbiol	10.3389/fmicb.2015.00413	2015
Phylogeny	Atacama desert is a source of new Micromonospora strains: description of Micromonospora sicca sp. nov.	Carro L, Golinska P, Saati-Santamaria Z, Igual JM, Klenk HP, Goodfellow M.	Syst Appl Microbiol	10.1016/j.syapm.2024.126542	2024
Phylogeny	Micromonospora kangleipakensis sp. nov., isolated from a sample of limestone quarry.	Nimaichand S, Zhang YG, Cheng J, Li L, Zhang DF, Zhou EM, Dong L, Ningthoujam DS, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.052746-0	2013
Phylogeny	Micromonospora soli sp. nov., isolated from rice rhizosphere soil.	Thawai C, Kittiwongwattana C, Thanaboripat D, Laosinwattana C, Koohakan P, Parinthawong N	Antonie Van Leeuwenhoek	10.1007/s10482-016-0651-3	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20659	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45612
#27452	IJSEM 4546 2013 ( DOI 10.1099/ijs.0.052746-0 , PubMed 23907218 )
#31123	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27452
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora kangleipakensis (DSM 45612, JCM 17696, MBRL 34)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004217615

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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