Name: Micromonospora schwarzwaldensis DSM 45708
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24212

Type strain:

Species: Micromonospora schwarzwaldensis

Culture col. no.: DSM 45708, CIP 110415, HKI 0641, JCM 30722

Strain history: CIP <- 2012, K. Martin, Hans Knöll Inst., Jena, Germany: strain HKI0641

NCBI tax ID(s): 1296375 (species)

SI-ID 390934

DSM 45708, CIP 110415

Other strains from Micromonospora schwarzwaldensis

M. schwarzwaldensis SF001192(FSU),
M. schwarzwaldensis 7/2/0.5/3, DSM 43714

Section

Micromonospora schwarzwaldensis DSM 45708 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil from flooding zone.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora schwarzwaldensis**
	Full Scientific Name (LPSN)	Micromonospora schwarzwaldensis Vela Gurovic et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31084]	Gram stain	positive
[Ref.: #122516]	Gram stain	positive

[Ref.: #122516]	Cell shape	rod-shaped

[Ref.: #122516]	Motility	no

[Ref.: #31084]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20658]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #20658]

Culture medium growth

[Ref.: #20658]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #20658]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #20658]

Culture medium growth

[Ref.: #20658]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #36421]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36421]

Culture medium growth

[Ref.: #36421]

Culture medium composition

expand / minimize

[Ref.: #20658]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #20658]

Culture medium growth

[Ref.: #20658]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20658]

Culture medium composition

expand / minimize

[Ref.: #20658]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #20658]

Culture medium growth

[Ref.: #20658]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20658]

Culture medium composition

expand / minimize

[Ref.: #122516]

Culture medium

CIP Medium 72

[Ref.: #122516]

Culture medium growth

[Ref.: #122516]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #20658]	growth	28 °C
[Ref.: #31084]	growth	20-37 °C
[Ref.: #31084]	optimum	28 °C
[Ref.: #36421]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #20658]	Temperature range	mesophilic
[Ref.: #31084]	Temperature range	mesophilic
[Ref.: #36421]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31084]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31084]

Oxygen tolerance

aerobe

[Ref.: #31084]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31084]		NaCl		growth	0-4	%

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-10(H₂), MK-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31084]	cellobiose ChEBI	+	carbon source
[Ref.: #31084]	lactose ChEBI	+	carbon source
[Ref.: #31084]	maltose ChEBI	+	carbon source
[Ref.: #31084]	salicin ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20658]	Sample type/isolated from	soil from flooding zone
[Ref.: #20658]	Geographic location (country and/or sea, region)	Black Forest, near Schwarzenbach dam
[Ref.: #20658]	Country	Germany
[Ref.: #20658]	Country ISO 3 Code	DEU
[Ref.: #20658]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil in the Black Forest
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe

[Ref.: #122516]	Sample type/isolated from	Environment, Soil from flood zone
[Ref.: #122516]	Geographic location (country and/or sea, region)	Black forest
[Ref.: #122516]	Country	Germany
[Ref.: #122516]	Country ISO 3 Code	DEU
[Ref.: #122516]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20658]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122516]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20658]	Micromonospora schwarzwaldensis strain HKI0641 16S ribosomal RNA gene, partial sequence	KC517406	1460	ENA	1296375 tax ID

Availability in culture collections External links

[Ref.: #20658]

Culture collection no.

DSM 45708, CIP 110415, HKI 0641, JCM 30722

[Ref.: #88157]

SI-ID 390934

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora mangrovi sp. nov., isolated from mangrove soil.	Xie QY, Ren J, Li L, Li Y, Deng ZX, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-015-0641-x	2016	*
Phylogeny	Micromonospora schwarzwaldensis sp. nov., a producer of telomycin, isolated from soil.	Gurovic MSV, Muller S, Domin N, Seccareccia I, Nietzsche S, Martin K, Nett M	Int J Syst Evol Microbiol	10.1099/ijs.0.051623-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20658

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45708

#31084

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27413 (see below)

#36421 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#88157

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390934.1 )

#122516 Collection of Institut Pasteur ; Curators of the CIP; CIP 110415

#27413

IJSEM 3812 2013 ( DOI 10.1099/ijs.0.051623-0 , PubMed 23667141 )

* These data were automatically processed and therefore are not curated

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