Micromonospora violae NEAU-zh8 | Type strain | DSM 45888, CGMCC 4.7102, JCM 31776

Caption:

Medium 554 28°C

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

Culture medium growth

Culture medium link

Culture medium composition

What are isolation sources categories?

	Temperatures	Kind of temperature		Temperature
[Ref.: #20657]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #20657]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-10(H₂), MK-10(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20657]	Sample type/isolated from	root of Viola philippica Car
[Ref.: #20657]	Host species	Viola philippica
[Ref.: #20657]	Geographic location (country and/or sea, region)	Heilongjiang Province, Harbin (45°45'N 126°41'E)
[Ref.: #20657]	Country	China
[Ref.: #20657]	Country ISO 3 Code	CHN
[Ref.: #20657]	Continent	Asia
[Ref.: #20657]	Geographic location	45.7500°/126.6830°

[Ref.: #67770]	Sample type/isolated from	Root of Viola philippica Car from Harbin
[Ref.: #67770]	Host species	Viola philippica
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

[Ref.: #69479]

Global distribution of 16S sequence KC161209 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	161
Soil Samples	1017
Animal Samples	219
Plant Samples	22
Total Samples	1419

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20657]	Micromonospora violae strain NEAU-zh8 16S ribosomal RNA gene, partial sequence	KC161209	1507	ENA	1278207 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Micromonospora violae DSM 45888	GCA_004217135	contig	GenBank	1278207 tax ID
[Ref.: #66792]	Micromonospora violae strain DSM 45888	1278207.3	wgs	PATRIC	1278207 tax ID	*
[Ref.: #66792]	Micromonospora violae DSM 45888	2806310543	draft	JGI IMG/M	1278207 tax ID	*

[Ref.: #20657]	GC-content	66.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	65.9-66.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora violae strain DSM 45888 PATRIC: 1278207.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora violae strain DSM 45888 PATRIC: 1278207.3
[Ref.: #69480]	motile	no	91.116	no
[Ref.: #69480]	gram-positive	yes	91.133	no
[Ref.: #69480]	anaerobic	no	99.327	no
[Ref.: #69480]	aerobic	yes	93.938	no
[Ref.: #69480]	halophile	no	95.206	no
[Ref.: #69480]	spore-forming	yes	94.875	no
[Ref.: #69480]	glucose-util	yes	88.041	no
[Ref.: #69480]	flagellated	no	97.36	no
[Ref.: #69480]	thermophile	no	98.927	no
[Ref.: #69480]	glucose-ferment	no	90.236	no

Availability in culture collections External links