Name: Zhihengliuella flava H85-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24207

Type strain:

Species: Zhihengliuella flava

Strain Designation: H85-3

Culture col. no.: DSM 26152, NBRC 109021

Strain history: <- M. Hamada, NBRC; NBRC 109021

NCBI tax ID(s): 1285193 (species)

SI-ID 400789

DSM 26152

Section

Zhihengliuella flava H85-3 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from marine beach sediment.

Gram-positive
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Zhihengliuella*
	Species	**Zhihengliuella flava**
	Full Scientific Name (LPSN)	Zhihengliuella flava Hamada et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31139]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31139]	Cell length	1.5 µm

[Ref.: #31139]	Cell width	0.45 µm

[Ref.: #31139]	Cell shape	rod-shaped

[Ref.: #31139]	Motility	no

[Ref.: #31139]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21163]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21163]

Culture medium growth

[Ref.: #21163]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21163]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21163]	growth	28 °C
[Ref.: #31139]	growth	10-37 °C
[Ref.: #31139]	optimum	25 °C

[Ref.: #21163]	Temperature range	mesophilic
[Ref.: #31139]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31139]			optimum	7.5
[Ref.: #31139]			growth	6.0-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31139]

Oxygen tolerance

facultative anaerobe

[Ref.: #31139]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31139]		NaCl		growth	0-10	%

[Ref.: #21163]	Murein short key	A11.35
[Ref.: #21163]	Murein types	A4alpha L-Lys-L-Ala-L-Glu

[Ref.: #31139]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31139]	cellobiose ChEBI	+	carbon source
[Ref.: #31139]	esculin ChEBI	+	hydrolysis
[Ref.: #31139]	fructose ChEBI	+	carbon source
[Ref.: #31139]	glucose ChEBI	+	carbon source
[Ref.: #31139]	glycerol ChEBI	+	carbon source
[Ref.: #31139]	maltose ChEBI	+	carbon source
[Ref.: #31139]	mannitol ChEBI	+	carbon source
[Ref.: #31139]	melibiose ChEBI	+	carbon source
[Ref.: #31139]	rhamnose ChEBI	+	carbon source
[Ref.: #31139]	sucrose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31139]		catalase	+	1.11.1.6
[Ref.: #31139]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21163]	Sample type/isolated from	marine beach sediment
[Ref.: #21163]	Geographic location (country and/or sea, region)	Chiba, Tokyo Bay, Tomiura Beach
[Ref.: #21163]	Country	Japan
[Ref.: #21163]	Country ISO 3 Code	JPN
[Ref.: #21163]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB778260 (>99% sequence identity) for Zhihengliuella flava from Microbeatlas

Aquatic Samples	24
Soil Samples	81
Animal Samples	205
Plant Samples	12
Total Samples	322

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21163]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21163]	Zhihengliuella flava gene for 16S ribosomal RNA, partial sequence	AB778260	1478	ENA	1285193 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Zhihengliuella flava DSM 26152	GCA_015751895	contig	GenBank	1285193 tax ID	*
[Ref.: #66792]	Zhihengliuella flava strain DSM 26152	1285193.3	wgs	PATRIC	1285193 tax ID	*
[Ref.: #66792]	Zhihengliuella flava DSM 26152	2880502868	draft	JGI IMG/M	1285193 tax ID	*

[Ref.: #21163]	GC-content	70.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31139]	GC-content	70.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Zhihengliuella flava strain DSM 26152 PATRIC: 1285193.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Zhihengliuella flava strain DSM 26152 PATRIC: 1285193.3
[Ref.: #69480]	motile	no	94.08	no
[Ref.: #69480]	gram-positive	yes	92.894	yes
[Ref.: #69480]	anaerobic	no	99.497	no
[Ref.: #69480]	aerobic	yes	94.36	yes
[Ref.: #69480]	halophile	yes	62.385	no
[Ref.: #69480]	spore-forming	no	90.468	no
[Ref.: #69480]	thermophile	no	98.077	yes
[Ref.: #69480]	glucose-util	yes	89.95	yes
[Ref.: #69480]	flagellated	no	95.735	yes
[Ref.: #69480]	glucose-ferment	no	82.955	no

Availability in culture collections External links

[Ref.: #21163]

Culture collection no.

DSM 26152, NBRC 109021

[Ref.: #88153]

SI-ID 400789

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zhihengliuella flava sp. nov., an actinobacterium isolated from sea sediment, and emended description of the genus Zhihengliuella.	Hamada M, Shibata C, Tamura T, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijs.0.053272-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21163

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26152

#31139

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27467 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88153

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400789.1 )

#27467

IJSEM 4760 2013 ( DOI 10.1099/ijs.0.053272-0 , PubMed 23990654 )

* These data were automatically processed and therefore are not curated

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Zhihengliuella flava strain DSM 26152

Zhihengliuella flava strain DSM 26152

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