Name: Kocuria indica NIO-1021
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24202

Type strain:

Species: Kocuria indica

Strain Designation: NIO-1021, NIO-201102, NIO-21

Culture col. no.: DSM 25126, CCTCC AB 2011129, JCM 30546, NCIM 5455

Strain history: DSM 25126 <-- S. G. Dastager; Natl. Inst. of Oceanogr., India; NIO-1021.

NCBI tax ID(s): 1049583 (species)

Section

Kocuria indica NIO-1021 is a mesophilic bacterium that was isolated from marine sediment from an intertidal region of mangroves.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Kocuria*
	Species	**Kocuria indica**
	Full Scientific Name (LPSN)	Kocuria indica Dastager et al. 2014

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20622]	Sample type/isolated from	marine sediment from an intertidal region of mangroves
[Ref.: #20622]	Geographic location (country and/or sea, region)	Goa Province, Chorao Island
[Ref.: #20622]	Country	India
[Ref.: #20622]	Country ISO 3 Code	IND
[Ref.: #20622]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment from an intertidal region of mangroves at Chorao Island
[Ref.: #67770]	Geographic location (country and/or sea, region)	Goa Province
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20622]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20622]	Kocuria indica strain NIO-1021 16S ribosomal RNA gene, partial sequence	HQ858010	1447	ENA	1049583 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kocuria indica NIO-1021	GCA_900177335	contig	GenBank	1049583 tax ID
[Ref.: #67770]	Kocuria indica DSM 25126	GCA_002237805	contig	GenBank	1049583 tax ID
[Ref.: #66792]	Kocuria indica NIO-1021	GCA_003667205	contig	GenBank	1049583 tax ID	*
[Ref.: #66792]	Kocuria indica strain DSM 25126	1049583.7	wgs	PATRIC	1049583 tax ID	*
[Ref.: #66792]	Kocuria indica strain DSM 25126	1049583.6	wgs	PATRIC	1049583 tax ID	*
[Ref.: #66792]	Kocuria indica NIO-1021	2708742531	draft	JGI IMG/M	1049583 tax ID	*

[Ref.: #20622]	GC-content	60.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	68.9 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kocuria indica strain DSM 25126 PATRIC: 1049583.7
[Ref.: #69480]	motile	no	94.489	no
[Ref.: #69480]	flagellated	no	98.025	no
[Ref.: #69480]	gram-positive	yes	94.477	no
[Ref.: #69480]	anaerobic	no	99.549	no
[Ref.: #69480]	aerobic	yes	92.161	no
[Ref.: #69480]	halophile	yes	75.62	no
[Ref.: #69480]	spore-forming	no	93.199	no
[Ref.: #69480]	thermophile	no	95.691	yes
[Ref.: #69480]	glucose-util	yes	87.659	no
[Ref.: #69480]	glucose-ferment	no	75.08	no

Availability in culture collections External links

[Ref.: #20622]

Culture collection no.

DSM 25126, CCTCC AB 2011129, JCM 30546, NCIM 5455

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kocuria indica sp. nov., isolated from a sediment sample.	Dastager SG, Tang SK, Srinivasan K, Lee JC, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.052548-0	2013	*
Phylogeny	Identification of a novel quinoline-based UV-protective pigment from a psychrotrophic Arctic bacterium.	Mandal S, Kundu S, Uddin MR, Das P, Paul P, Roy P, Tribedi P, Sahoo P	J Appl Microbiol	10.1111/jam.15760	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20622

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25126

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Kocuria indica strain DSM 25126

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