Name: Aeromonas media RM
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 242

Type strain:

Species: Aeromonas media

Strain Designation: RM

Culture col. no.: CCUG 14453, CCM 3653, JCM 2385, LMG 9073, DSM 4881, ATCC 33907, BCRC 12211, BCRC 14129, CECT 4232, CIP 103208, LMG 7907, NCIMB 2237

Strain history: CIP <- 1988, NCIMB <- ATCC <- B. Austin: strain RM <- D.A. Allen

NCBI tax ID(s): 651 (species)

SI-ID 382

LMG 9073, ATCC 33907, CCM 3653, CCUG 14453, CIP 103208, JCM 2385, LMG 7907, NCIMB 2237, NCMB 2237, DSM 4881, CCRC 14129, CECT 4232, CCRC 12211, BCRC 12211, BCRC 14129, CECT 4233, CNCTC 5719

Special Collections

Other strains from Aeromonas media

Section

When using BacDive for research please cite our paper

Aeromonas media RM is a facultative anaerobe, chemoorganotroph, psychrophilic bacterium that forms circular colonies and was isolated from fish farm effluent.

colony-forming
Gram-negative
rod-shaped
chemoorganotroph
facultative anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Aeromonadaceae*
	Genus	*Aeromonas*
	Species	**Aeromonas media**
	Full Scientific Name (LPSN)	Aeromonas media Allen et al. 1983

Information on morphological and physiological properties Morphology

[Ref.: #23254]	Gram stain	negative
[Ref.: #120867]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %99.994
[Ref.: #125439]	Gram stain	negative Confidence in %99.1

[Ref.: #23254]	Cell length	1-2 µm

[Ref.: #23254]	Cell shape	rod-shaped
[Ref.: #120867]	Cell shape	rod-shaped

[Ref.: #23254]	Motility	no
[Ref.: #120867]	Motility	yes

[Ref.: #23254]	Type of hemolysis	alpha/beta
[Ref.: #23254]	Hemolysis ability	1
[Ref.: #23254]	Colony size	2 mm
[Ref.: #23254]	Colony color	cream, shiny
[Ref.: #23254]	Colony shape	circular
[Ref.: #23254]	Incubation period	2 days
[Ref.: #23254]	Cultivation medium used	TSA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23254]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #23254]

Culture medium growth

[Ref.: #34124]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34124]

Culture medium growth

[Ref.: #34124]

Culture medium composition

expand / minimize

[Ref.: #1862]

Culture medium

REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)

[Ref.: #1862]

Culture medium growth

[Ref.: #1862]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1862]

Culture medium composition

expand / minimize

[Ref.: #120867]

Culture medium

CIP Medium 3

[Ref.: #120867]

Culture medium growth

[Ref.: #120867]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1862]		growth	30 °C
[Ref.: #23254]		growth	4 °C
[Ref.: #23254]		growth	37 °C
[Ref.: #23254]	negative	growth	42 °C
[Ref.: #34124]		growth	25 °C
[Ref.: #46105]		growth	22 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #120867]		growth	5-37 °C
[Ref.: #120867]	negative	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #120867]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	anaerobe Confidence in %94.4

[Ref.: #23254]

Nutrition type

chemoorganotroph

[Ref.: #125438]	Ability of spore formation	no Confidence in %91.101
[Ref.: #125439]	Ability of spore formation	no Confidence in %99.4

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23254]		NaCl		maximum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23254]	4-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #23254]	acetate ChEBI	+	carbon source
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #23254]	butyrate ChEBI	-	growth
[Ref.: #23254]	cellobiose ChEBI	-	carbon source
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23254]	cellulose ChEBI	-	degradation
[Ref.: #23254]	chitin ChEBI	+	degradation
[Ref.: #23254]	citrate ChEBI	-	growth
[Ref.: #120867]	citrate ChEBI	+	carbon source
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	D-fructose ChEBI	-	carbon source
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	D-galactose ChEBI	-	growth
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #23254]	D-mannose ChEBI	-	growth
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23254]	D-ribose ChEBI	-	growth
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23254]	D-sorbitol ChEBI	-	carbon source
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	D-trehalose ChEBI	-	carbon source
[Ref.: #23254]	D-xylose ChEBI	-	carbon source
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	dl-alanine ChEBI	-	growth
[Ref.: #23254]	dna ChEBI	-	degradation
[Ref.: #23254]	elastin ChEBI	-	degradation
[Ref.: #23254]	erythritol ChEBI	-	carbon source
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	esculin ChEBI	-	degradation
[Ref.: #23254]	ethanol ChEBI	-	carbon source
[Ref.: #23254]	formate ChEBI	-	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	gelatin ChEBI	+	degradation
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	gluconate ChEBI	-	oxidation
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23254]	glucose ChEBI	+	fermentation
[Ref.: #120867]	glucose ChEBI	+	fermentation
[Ref.: #23254]	glutamate ChEBI	+	carbon source
[Ref.: #23254]	glycerol ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23254]	inulin ChEBI	-	carbon source
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	L-arabinose ChEBI	+	carbon source
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	L-leucine ChEBI	-	carbon source
[Ref.: #23254]	L-proline ChEBI	+	carbon source
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #23254]	L-serine ChEBI	+	carbon source
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	L-valine ChEBI	-	carbon source
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	lactate ChEBI	-	growth
[Ref.: #23254]	lactose ChEBI	-	growth
[Ref.: #120867]	lactose ChEBI	+	fermentation
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23254]	lecithin ChEBI	-	degradation
[Ref.: #23254]	lysine ChEBI	-	degradation
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #23254]	malate ChEBI	+	growth
[Ref.: #23254]	malonate ChEBI	-	carbon source
[Ref.: #120867]	malonate ChEBI	-	assimilation
[Ref.: #23254]	maltose ChEBI	-	growth
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23254]	mannitol ChEBI	+	carbon source
[Ref.: #120867]	mannitol ChEBI	+	fermentation
[Ref.: #23254]	melezitose ChEBI	-	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	myo-inositol ChEBI	-	carbon source
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23254]	nitrate ChEBI	+	reduction
[Ref.: #120867]	nitrate ChEBI	+	reduction
[Ref.: #120867]	nitrite ChEBI	+	reduction
[Ref.: #23254]	ornithine ChEBI	-	degradation
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	pyruvate ChEBI	+	carbon source
[Ref.: #23254]	raffinose ChEBI	-	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	ribitol ChEBI	-	carbon source
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	rna ChEBI	+	degradation
[Ref.: #120867]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #23254]	starch ChEBI	+	degradation
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23254]	succinate ChEBI	+	carbon source
[Ref.: #23254]	sucrose ChEBI	-	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23254]	trimethoxybenzoate	-	carbon source
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23254]	tween 20 ChEBI	+	degradation
[Ref.: #23254]	tween 40 ChEBI	+	degradation
[Ref.: #23254]	tween 60 ChEBI	+	degradation
[Ref.: #23254]	tween 80 ChEBI	+	degradation
[Ref.: #23254]	tyrosine ChEBI	-	degradation
[Ref.: #23254]	urea ChEBI	-	degradation
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #23254]	xanthine ChEBI	-	degradation
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120867]	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes
[Ref.: #23254]	ampicillin ChEBI	no
[Ref.: #23254]	chloramphenicol ChEBI	yes
[Ref.: #23254]	chlortetracyclin ChEBI	yes
[Ref.: #23254]	cloxacillin ChEBI	no
[Ref.: #23254]	colistin ChEBI	yes
[Ref.: #23254]	erythromycin ChEBI	yes
[Ref.: #23254]	furazolidone ChEBI	yes
[Ref.: #23254]	gentamicin ChEBI	yes
[Ref.: #23254]	kanamycin ChEBI	yes
[Ref.: #23254]	neomycin ChEBI	yes
[Ref.: #23254]	nitrofurantoin ChEBI	yes
[Ref.: #23254]	novobiocin ChEBI	no
[Ref.: #23254]	oxytetracycline ChEBI	yes
[Ref.: #23254]	penicillin g ChEBI	no
[Ref.: #23254]	streptomycin ChEBI	yes
[Ref.: #23254]	sulfisoxazole ChEBI	no
[Ref.: #23254]	tetracycline ChEBI	yes
[Ref.: #23254]	vibriostat ChEBI	no
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23254]	acetoin ChEBI	no
[Ref.: #23254]	hydrogen sulfide ChEBI	no
[Ref.: #23254]	indole ChEBI	yes
[Ref.: #120867]	indole ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #23254]	acetoin ChEBI	-
[Ref.: #120867]	acetoin ChEBI	-
[Ref.: #23254]	glucose ChEBI		+
[Ref.: #120867]	glucose ChEBI		+
[Ref.: #68368]	acetoin ChEBI	-			* from API 20E
[Ref.: #68368]	indole ChEBI			+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120867]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #23254]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120867]	amylase	+
[Ref.: #23254]	arginine dihydrolase	+	3.5.3.6
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #23254]	beta-galactosidase	+	3.2.1.23
[Ref.: #120867]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API 20E
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120867]	caseinase	+	3.4.21.50
[Ref.: #23254]	catalase	+	1.11.1.6
[Ref.: #120867]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #23254]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #120867]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120867]	gelatinase	+/-
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #120867]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120867]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120867]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120867]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #120867]	oxidase	+
[Ref.: #120867]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #120867]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120867]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #120867]	tween esterase	+
[Ref.: #120867]	urease	-	3.5.1.5
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #46105]

Fatty acid	Percentage	ECL
C16:1 ω7c	36.5	15.819
C16:0	30.7	16
C18:1 ω7c /12t/9t	8	17.824
C12:0	7.2	12
C14:0	5.9	14
C14:0 3OH/C16:1 ISO I	5.8	15.485
Unidentified	1.3	12.269
C15:0 ISO 3OH	1.2	16.135
C18:1 ω9c	1.1	17.769
Unidentified	1	16.299
C18:0	0.7	18
unknown 14.503	0.5	14.503

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #1862]	18425	+	+	-	-	-	-	-	-	+	-	-	+	+	-	-	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #120867]	9207	not determinedn.d.	+	-	-	+	+	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	-	+	+/-	+/-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120867]	361	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	+	+	+	-	+	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	-	+	-	-	-	+	-	-	+	+	+	-	-	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120867]	7431	-	+	+	+	-	+	-	+	-	-	+	-	-	+	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1862]	Sample type/isolated from	fish farm effluent

[Ref.: #46105]	Sample type/isolated from	River water,fish farm
[Ref.: #46105]	Country	United Kingdom
[Ref.: #46105]	Country ISO 3 Code	GBR
[Ref.: #46105]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Fish farm effluent

[Ref.: #120867]	Sample type/isolated from	Environment, Fish farm effluent
[Ref.: #120867]	Country	United Kingdom
[Ref.: #120867]	Country ISO 3 Code	GBR
[Ref.: #120867]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Aquaculture
#Engineered	#Waste	-
#Host	#Fishes	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X60410 (>99% sequence identity) for Aeromonas from Microbeatlas

Aquatic Samples	3538
Soil Samples	541
Animal Samples	1487
Plant Samples	208
Total Samples	5774

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1862]	Pathogenicity (human)	yes, in single cases
[Ref.: #1862]	Pathogenicity (animal)	yes, in single cases
[Ref.: #1862]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120867]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Aeromonas media 16S rRNA gene, strain ATCC 33907	X60410	1503	GenBank ENA	651 tax ID	*
[Ref.: #20218]	A.media (ATCC 33907T) gene for 16S ribosomal RNA	X74679	1460	GenBank ENA	651 tax ID	*
[Ref.: #20218]	Aeromonas media 16S rRNA	D11174	197	GenBank ENA	651 tax ID	*
[Ref.: #20218]	Aeromonas media 16S rRNA	D11223	207	GenBank ENA	651 tax ID	*
[Ref.: #20218]	Aeromonas media 16S rRNA	D11272	200	GenBank ENA	651 tax ID	*
[Ref.: #124043]	Aeromonas media strain ATCC 33907 16S ribosomal RNA gene, partial sequence.	OR660255	1033	GenBank ENA	651 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aeromonas media CECT 4232	GCA_000819985	scaffold	GenBank ENA	651 tax ID
[Ref.: #66792]	Aeromonas media ATCC 33907	GCA_018359985	contig	GenBank ENA	651 tax ID	*
[Ref.: #66792]	Aeromonas media strain ATCC 33907	651.66	wgs	PATRIC	651 tax ID	*
[Ref.: #66792]	Aeromonas media strain CECT 4232	651.7	wgs	PATRIC	651 tax ID	*
[Ref.: #66792]	Aeromonas media strain CIP 103208	651.65	wgs	PATRIC	651 tax ID	*
[Ref.: #66792]	Aeromonas media CECT 4232	2645727928	draft	JGI IMG/M	651 tax ID	*

[Ref.: #23254]	GC-content	62.3 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	62.1-62.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aeromonas media strain ATCC 33907 PATRIC: 651.66
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99.994	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.579	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	91.101	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	71.844	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	100	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	89.013	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aeromonas media CECT 4232 NCBI: GCA_000819985
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	71.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.1
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	94.4

Availability in culture collections External links

[Ref.: #1862]

Culture collection no.

CCUG 14453, CCM 3653, JCM 2385, LMG 9073, DSM 4881, ATCC 33907, BCRC 12211, BCRC 14129, CECT 4232, CIP 103208, LMG 7907, NCIMB 2237

[Ref.: #69924]

SI-ID 382

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aeromonas rivipollensis sp. nov., a novel species isolated from aquatic samples.	Marti E, Balcazar JL	J Basic Microbiol	10.1002/jobm.201500264	2015	*

References

#1862

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4881

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23254

D. A. ALLEN, B. AUSTIN, R. R. COLWELL: Aeromonas media, a New Species Isolated from River Water. IJSEM 33: 599 - 604 1983 ( DOI 10.1099/00207713-33-3-599 )

#34124 ; Curators of the CIP;
#46105 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14453

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69924

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID382.1 )

#120867 Collection of Institut Pasteur ; Curators of the CIP; CIP 103208

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Search for species Aeromonas media in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Aeromonas media strain ATCC 33907

Aeromonas media CECT 4232

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