Pseudarthrobacter siccitolerans (DSM 28024, CECT 8257, LMG 27359)

Name: Pseudarthrobacter siccitolerans (DSM 28024, CECT 8257, LMG 27359)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24196

Type strain

Strain Designation 4J27

Culture col. no. DSM 28024 CECT 8257 LMG 27359 4J27 CIP 110704

NCBI tax ID(s) 861266

Special Collections DSMZ Literature strains CIP

Links

Pseudarthrobacter siccitolerans 4J27 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from Nerium oleander rhizosphere subjected to seasonal drought.

Gram-positive rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 382574

LMG 27359,CECT 8257,DSM 28024,CIP 110704

@ref 20215

Last LPSN update 2025-12-16 09:52:48

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Pseudarthrobacter

Species Pseudarthrobacter siccitolerans

Full scientific name Pseudarthrobacter siccitolerans (SantaCruz-Calvo et al. 2013) Busse 2016

Synonyms (1)

Arthrobacter siccitolerans

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
31127	positive	rod-shaped
122601	positive	rod-shaped

Pigmentation

31127

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20321	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
122601	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20321	positive	growth	28	mesophilic
31127	positive	growth	15-35
31127	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31127	positive	optimum	7
31127	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31127	aerobe
125439	obligate aerobe	90.1

Spore formation

31127

Spore formationno

Compound production

20321

Compoundxeroprotectants

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31127	NaCl	positive	growth	0-4.64 %
31127	NaCl	positive	optimum	1.16 %

Observation

31127

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31127	28644 ChEBI	2-oxopentanoate	+	carbon source
31127	30089 ChEBI	acetate	+	carbon source
31127	22599 ChEBI	arabinose	+	carbon source
31127	17057 ChEBI	cellobiose	+	carbon source
31127	23652 ChEBI	dextrin	+	carbon source
31127	4853 ChEBI	esculin	+	hydrolysis
31127	28757 ChEBI	fructose	+	carbon source
31127	28260 ChEBI	galactose	+	carbon source
31127	24175 ChEBI	galacturonate	+	carbon source
31127	17234 ChEBI	glucose	+	carbon source
31127	29987 ChEBI	glutamate	+	carbon source
31127	17754 ChEBI	glycerol	+	carbon source
31127	15428 ChEBI	glycine	+	carbon source
31127	17596 ChEBI	inosine	+	carbon source
31127	21217 ChEBI	L-alaninamide	+	carbon source
31127	24996 ChEBI	lactate	+	carbon source
31127	25115 ChEBI	malate	+	carbon source
31127	17306 ChEBI	maltose	+	carbon source
31127	29864 ChEBI	mannitol	+	carbon source
31127	37684 ChEBI	mannose	+	carbon source
31127	28053 ChEBI	melibiose	+	carbon source
31127	506227 ChEBI	N-acetylglucosamine	+	carbon source
31127	17148 ChEBI	putrescine	+	carbon source
31127	15361 ChEBI	pyruvate	+	carbon source
31127	16634 ChEBI	raffinose	+	carbon source
31127	26546 ChEBI	rhamnose	+	carbon source
31127	33942 ChEBI	ribose	+	carbon source
31127	17814 ChEBI	salicin	+	carbon source
31127	30911 ChEBI	sorbitol	+	carbon source
31127	17992 ChEBI	sucrose	+	carbon source
31127	17748 ChEBI	thymidine	+	carbon source
31127	27082 ChEBI	trehalose	+	carbon source
31127	16704 ChEBI	uridine	+	carbon source
31127	17151 ChEBI	xylitol	+	carbon source
31127	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31127	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
31127	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
31127	catalase	+	1.11.1.6
31127	pyrazinamidase	+	3.5.1.B15

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
20321	Nerium oleander rhizosphere subjected to seasonal drought	Nerium oleander	Granada	Spain	ESP	Europe
122601	Environment, Nerium oleander, rhizosphere		Granada, Spain	Spain	ESP	Europe	2009

Taxonmaps

69479

Global distribution of 16S sequence GU815139 (>99% sequence identity) for Pseudarthrobacter from Microbeatlas

Aquatic Samples	109
Soil Samples	822
Animal Samples	156
Plant Samples	439
Total Samples	1526

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20321	1	Risk group (German classification)
122601	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM104689v1 assembly for Pseudarthrobacter siccitolerans 4J27	contig	GCA_001046895	2648501281	861266	67.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20321	Arthrobacter siccitolerans strain 4J27 16S ribosomal RNA gene, partial sequence	GU815139	1420		861266

GC content

@ref	GC-content (mol%)	Method
20321	65.3	high performance liquid chromatography (HPLC)
31127	65.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudarthrobacter siccitolerans 4J27
NCBI: GCA_001046895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	79.00	no
125439	motility	BacteriaNetⓘ	no	65.20	no
125439	gram_stain	BacteriaNetⓘ	positive	83.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter ginsengisoli sp. nov., isolated from soil of a ginseng field.	Siddiqi MZ, Kim YJ, Hoang VA, Siddiqi MH, Huq MA, Yang DC	Arch Microbiol	10.1007/s00203-014-1025-8	2014
Phylogeny	Arthrobacter siccitolerans sp. nov., a highly desiccation-tolerant, xeroprotectant-producing strain isolated from dry soil.	SantaCruz-Calvo L, Gonzalez-Lopez J, Manzanera M	Int J Syst Evol Microbiol	10.1099/ijs.0.052902-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20321	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28024
#31127	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27456 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122601	Collection of Institut Pasteur ; Curators of the CIP; CIP 110704
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudarthrobacter siccitolerans (DSM 28024, CECT 8257, LMG 27359)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001046895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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