Name: Canibacter oris DSM 27064
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24190

Type strain:

Species: Canibacter oris

Culture col. no.: DSM 27064, CCUG 64069, IMMIB Q2029717

Strain history: <- A. F. Yassin, Inst. Med. Microbiology, Immunology, Univ. Bonn, Germany; Q2029717 <- PathWest Lab. Medicine WA, Dept. of Microbiol., Australia

NCBI tax ID(s): 1365628 (species)

SI-ID 400853

DSM 27064, CCUG 64069

Section

Canibacter oris DSM 27064 is a microaerophile, mesophilic human pathogen that was isolated from infected human wound following a dog bite on a finger.

human pathogen
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Canibacter*
	Species	**Canibacter oris**
	Full Scientific Name (LPSN)	Canibacter oris Aravena-Román et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.908

[Ref.: #63073]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21334]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #21334]

Culture medium growth

[Ref.: #21334]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21334]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21334]			growth	37 °C
[Ref.: #63073]			growth	37 °C

[Ref.: #21334]	Temperature range	mesophilic
[Ref.: #63073]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21334]	Oxygen tolerance	microaerophile
[Ref.: #63073]	Oxygen tolerance	microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

[Ref.: #21334]	Murein short key	B01
[Ref.: #21334]	Murein types	B1alpha {Gly} [L-Lys] D-Glu(Hyg)-Gly-L-Lys

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21334]	Sample type/isolated from	infected human wound following a dog bite on a finger
[Ref.: #21334]	Geographic location (country and/or sea, region)	Western Australia
[Ref.: #21334]	Country	Australia
[Ref.: #21334]	Country ISO 3 Code	AUS
[Ref.: #21334]	Continent	Australia and Oceania

[Ref.: #63073]	Sample type/isolated from	Human tendon surface,3rd finger,dog bite
[Ref.: #63073]	Sampling date	2011-08-01
[Ref.: #63073]	Geographic location (country and/or sea, region)	Perth
[Ref.: #63073]	Country	Australia
[Ref.: #63073]	Country ISO 3 Code	AUS
[Ref.: #63073]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Human	-
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Limb	#Hand

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HG326599 (>99% sequence identity) for Canibacter oris subclade from Microbeatlas

Aquatic Samples	35
Soil Samples	5
Animal Samples	1818
Plant Samples	8
Total Samples	1866

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21334]	Pathogenicity (human)	yes, in single cases
[Ref.: #21334]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21334]	Canibacter oris partial 16S rRNA gene, type strain IMMIB Q2029717T	HG326599	1486	ENA	1365628 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Canibacter oris DSM 27064	GCA_014197205	contig	GenBank	1365628 tax ID	*
[Ref.: #66792]	Canibacter oris strain DSM 27064	1365628.3	wgs	PATRIC	1365628 tax ID	*
[Ref.: #66792]	Canibacter oris DSM 27064	2830496992	draft	JGI IMG/M	1365628 tax ID	*

[Ref.: #21334]

GC-content

56.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Canibacter oris strain DSM 27064 PATRIC: 1365628.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Canibacter oris strain DSM 27064 PATRIC: 1365628.3
[Ref.: #69480]	motile	no	94.153	no
[Ref.: #69480]	gram-positive	yes	88.23	no
[Ref.: #69480]	anaerobic	no	98.148	yes
[Ref.: #69480]	halophile	no	76.97	no
[Ref.: #69480]	spore-forming	no	96.826	no
[Ref.: #69480]	glucose-util	yes	75.382	no
[Ref.: #69480]	thermophile	no	98.01	yes
[Ref.: #69480]	flagellated	no	96.646	no
[Ref.: #69480]	aerobic	no	68.887	yes
[Ref.: #69480]	glucose-ferment	no	74.112	no

Availability in culture collections External links

[Ref.: #21334]

Culture collection no.

DSM 27064, CCUG 64069, IMMIB Q2029717

[Ref.: #88143]

SI-ID 400853

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Canibacter oris gen. nov., sp. nov., isolated from an infected human wound.	Aravena-Roman M, Inglis TJJ, Siering C, Schumann P, Yassin AF	Int J Syst Evol Microbiol	10.1099/ijs.0.058859-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21334

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27064

#63073 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 64069

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88143

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400853.1 )

* These data were automatically processed and therefore are not curated

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Canibacter oris strain DSM 27064

Canibacter oris strain DSM 27064

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