Name: Agromyces iriomotensis IY07-20
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24184

Type strain:

Species: Agromyces iriomotensis

Strain Designation: IY07-20

Culture col. no.: DSM 26155, NBRC 106452

Strain history: <- M. Hamada, NBRC <- Y. Ishida

NCBI tax ID(s): 717856 (species)

SI-ID 406544

DSM 26155

Section

Agromyces iriomotensis IY07-20 is a mesophilic bacterium that was isolated from soil from a pineapple field.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Agromyces*
	Species	**Agromyces iriomotensis**
	Full Scientific Name (LPSN)	Agromyces iriomotensis Hamada et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20272]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20272]

Culture medium growth

[Ref.: #20272]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20272]

Culture medium composition

expand / minimize

[Ref.: #20272]

Culture medium

PP-MEDIUM (DSMZ Medium 513)

[Ref.: #20272]

Culture medium growth

[Ref.: #20272]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20272]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20272]			growth	28 °C

[Ref.: #20272]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20272]	Sample type/isolated from	soil from a pineapple field
[Ref.: #20272]	Geographic location (country and/or sea, region)	Okinawa, Iriomote Island
[Ref.: #20272]	Country	Japan
[Ref.: #20272]	Country ISO 3 Code	JPN
[Ref.: #20272]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB546308 (>99% sequence identity) for Agromyces from Microbeatlas

Aquatic Samples	10
Soil Samples	259
Animal Samples	18
Plant Samples	3
Total Samples	290

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20272]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20272]	Agromyces iriomotensis gene for 16S ribosomal RNA, partial sequence	AB546308	1482	ENA	717856 tax ID

[Ref.: #20272]

GC-content

72.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #20272]

Culture collection no.

DSM 26155, NBRC 106452

[Ref.: #88137]

SI-ID 406544

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces humi sp. nov., actinobacterium isolated from farm soil.	Lee JC, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004376	2020	*
Phylogeny	Agromyces mariniharenae sp. nov., a novel indole-acetic acid producing actinobacterium isolated from marine sand.	Zhang Y, Zhao J, Hu J, Han C, Yu B, Wu Y, Xiao J, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.005026	2021	*
Phylogeny	Agromyces iriomotensis sp. nov. and Agromyces subtropicus sp. nov., isolated from soil.	Hamada M, Shibata C, Ishida Y, Tamura T, Yamamura H, Hayakawa M, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijs.0.057349-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20272

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26155

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88137

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406544.1 )

* These data were automatically processed and therefore are not curated

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